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Cluster: Rep_556_CGC84

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_556_c_65 Rep_556_c_65_8 7307 8293 + GH43_34
STP Rep_556_c_65 Rep_556_c_65_9 8444 9097 + TetR_N
pfam Rep_556_c_65 Rep_556_c_65_10 9094 10380 + OEP | OEP
TC Rep_556_c_65 Rep_556_c_65_11 10392 11294 + 3.A.1.105.16
TC Rep_556_c_65 Rep_556_c_65_12 11311 12213 + 3.A.1.105.15
TC Rep_556_c_65 Rep_556_c_65_13 12413 13147 + 3.A.1.105.15
TC Rep_556_c_65 Rep_556_c_65_14 13149 14264 + 3.A.1.105.4
TC Rep_556_c_65 Rep_556_c_65_15 14274 15371 + 3.A.1.105.15
Gene ID: Rep_556_c_65_8
Type: CAZyme
Location: 7307 - 8293 (+)
Gene ID: Rep_556_c_65_9
Type: STP
Location: 8444 - 9097 (+)
Gene ID: Rep_556_c_65_10
Type: pfam
Location: 9094 - 10380 (+)
Gene ID: Rep_556_c_65_11
Type: TC
Location: 10392 - 11294 (+)
Gene ID: Rep_556_c_65_12
Type: TC
Location: 11311 - 12213 (+)
Gene ID: Rep_556_c_65_13
Type: TC
Location: 12413 - 13147 (+)
Gene ID: Rep_556_c_65_14
Type: TC
Location: 13149 - 14264 (+)
Gene ID: Rep_556_c_65_15
Type: TC
Location: 14274 - 15371 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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