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Cluster: Rep_556_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_556_c_1 Rep_556_c_1_11 14517 17822 + 1.B.14.6.1
TC Rep_556_c_1 Rep_556_c_1_12 17847 19382 + 8.A.46.1.4
pfam Rep_556_c_1 Rep_556_c_1_13 19629 20546 + DHDPS
pfam Rep_556_c_1 Rep_556_c_1_14 20553 21755 + GlcNAc_2-epim
TC Rep_556_c_1 Rep_556_c_1_15 21872 23116 + 2.A.1.14.14
CAZyme Rep_556_c_1 Rep_556_c_1_16 23234 24856 + CBM93 | GH33
CAZyme Rep_556_c_1 Rep_556_c_1_17 24863 26872 + GH20
CAZyme Rep_556_c_1 Rep_556_c_1_18 26895 29000 + CE20
Gene ID: Rep_556_c_1_11
Type: TC
Location: 14517 - 17822 (+)
Gene ID: Rep_556_c_1_12
Type: TC
Location: 17847 - 19382 (+)
Gene ID: Rep_556_c_1_13
Type: pfam
Location: 19629 - 20546 (+)
Gene ID: Rep_556_c_1_14
Type: pfam
Location: 20553 - 21755 (+)
Gene ID: Rep_556_c_1_15
Type: TC
Location: 21872 - 23116 (+)
Gene ID: Rep_556_c_1_16
Type: CAZyme
Location: 23234 - 24856 (+)
Gene ID: Rep_556_c_1_17
Type: CAZyme
Location: 24863 - 26872 (+)
Gene ID: Rep_556_c_1_18
Type: CAZyme
Location: 26895 - 29000 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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