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Cluster: Rep_556_CGC77

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_556_c_56 Rep_556_c_56_18 22121 23620 - 8.A.46.2.2
TC Rep_556_c_56 Rep_556_c_56_19 23640 26888 - 1.B.14.6.2
NULL(UNKNOWN) Rep_556_c_56 Rep_556_c_56_20 27862 28188 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_556_c_56 Rep_556_c_56_21 28517 29200 + DnaB
TC Rep_556_c_56 Rep_556_c_56_22 29101 30456 - 2.A.66.1.32
peptidase Rep_556_c_56 Rep_556_c_56_23 30460 31800 - M38.UNW
CAZyme Rep_556_c_56 Rep_556_c_56_24 31865 35020 - GH106
CAZyme Rep_556_c_56 Rep_556_c_56_25 35125 37332 - PL8
CAZyme Rep_556_c_56 Rep_556_c_56_26 37343 38080 - GT2
Gene ID: Rep_556_c_56_18
Type: TC
Location: 22121 - 23620 (-)
Gene ID: Rep_556_c_56_19
Type: TC
Location: 23640 - 26888 (-)
Gene ID: Rep_556_c_56_20
Type:
Location: 27862 - 28188 (+)
Gene ID: Rep_556_c_56_21
Type: pfam
Location: 28517 - 29200 (+)
Gene ID: Rep_556_c_56_22
Type: TC
Location: 29101 - 30456 (-)
Gene ID: Rep_556_c_56_23
Type: peptidase
Location: 30460 - 31800 (-)
Gene ID: Rep_556_c_56_24
Type: CAZyme
Location: 31865 - 35020 (-)
Gene ID: Rep_556_c_56_25
Type: CAZyme
Location: 35125 - 37332 (-)
Gene ID: Rep_556_c_56_26
Type: CAZyme
Location: 37343 - 38080 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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