Cluster: Rep_556_CGC71
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_556
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_556_c_50 | Rep_556_c_50_5 | 4540 | 4965 | + | 1.A.22.1.1 |
| pfam | Rep_556_c_50 | Rep_556_c_50_6 | 4998 | 6350 | - | AA_kinase | ACT_9 |
| TC | Rep_556_c_50 | Rep_556_c_50_7 | 6372 | 8102 | - | 2.A.21.9.1 |
| pfam | Rep_556_c_50 | Rep_556_c_50_8 | 8104 | 9225 | - | KdpD |
| NULL(UNKNOWN) | Rep_556_c_50 | Rep_556_c_50_9 | 9239 | 9994 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_556_c_50 | Rep_556_c_50_10 | 10043 | 10621 | - | 3.A.3.7.2 |
| TC | Rep_556_c_50 | Rep_556_c_50_11 | 10643 | 12685 | - | 3.A.3.7.2 |
| TC | Rep_556_c_50 | Rep_556_c_50_12 | 12713 | 14422 | - | 3.A.3.7.2 |
| NULL(UNKNOWN) | Rep_556_c_50 | Rep_556_c_50_13 | 14540 | 14641 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_556_c_50 | Rep_556_c_50_14 | 14992 | 15660 | + | CAT |
| CAZyme | Rep_556_c_50 | Rep_556_c_50_15 | 15759 | 17789 | - | GH182 |
| CAZyme | Rep_556_c_50 | Rep_556_c_50_16 | 17807 | 18817 | - | GH43_3 |
| CAZyme | Rep_556_c_50 | Rep_556_c_50_17 | 18814 | 19770 | - | GH43_31 |
| CAZyme | Rep_556_c_50 | Rep_556_c_50_18 | 19795 | 22584 | - | GH43_31 |
| pfam | Rep_556_c_50 | Rep_556_c_50_19 | 22671 | 24242 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_556_c_50 | Rep_556_c_50_20 | 24262 | 27261 | - | 1.B.14.6.1 |
Gene ID: Rep_556_c_50_5
Type: TC
Location: 4540 - 4965 (+)
Type: TC
Location: 4540 - 4965 (+)
Gene ID: Rep_556_c_50_6
Type: pfam
Location: 4998 - 6350 (-)
Type: pfam
Location: 4998 - 6350 (-)
Gene ID: Rep_556_c_50_7
Type: TC
Location: 6372 - 8102 (-)
Type: TC
Location: 6372 - 8102 (-)
Gene ID: Rep_556_c_50_8
Type: pfam
Location: 8104 - 9225 (-)
Type: pfam
Location: 8104 - 9225 (-)
Gene ID: Rep_556_c_50_9
Type:
Location: 9239 - 9994 (-)
Type:
Location: 9239 - 9994 (-)
Gene ID: Rep_556_c_50_10
Type: TC
Location: 10043 - 10621 (-)
Type: TC
Location: 10043 - 10621 (-)
Gene ID: Rep_556_c_50_11
Type: TC
Location: 10643 - 12685 (-)
Type: TC
Location: 10643 - 12685 (-)
Gene ID: Rep_556_c_50_12
Type: TC
Location: 12713 - 14422 (-)
Type: TC
Location: 12713 - 14422 (-)
Gene ID: Rep_556_c_50_13
Type:
Location: 14540 - 14641 (-)
Type:
Location: 14540 - 14641 (-)
Gene ID: Rep_556_c_50_14
Type: pfam
Location: 14992 - 15660 (+)
Type: pfam
Location: 14992 - 15660 (+)
Gene ID: Rep_556_c_50_15
Type: CAZyme
Location: 15759 - 17789 (-)
Type: CAZyme
Location: 15759 - 17789 (-)
Gene ID: Rep_556_c_50_16
Type: CAZyme
Location: 17807 - 18817 (-)
Type: CAZyme
Location: 17807 - 18817 (-)
Gene ID: Rep_556_c_50_17
Type: CAZyme
Location: 18814 - 19770 (-)
Type: CAZyme
Location: 18814 - 19770 (-)
Gene ID: Rep_556_c_50_18
Type: CAZyme
Location: 19795 - 22584 (-)
Type: CAZyme
Location: 19795 - 22584 (-)
Gene ID: Rep_556_c_50_19
Type: pfam
Location: 22671 - 24242 (-)
Type: pfam
Location: 22671 - 24242 (-)
Gene ID: Rep_556_c_50_20
Type: TC
Location: 24262 - 27261 (-)
Type: TC
Location: 24262 - 27261 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900540715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.