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Cluster: Rep_556_CGC68

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_556_c_47 Rep_556_c_47_12 10646 11773 + 9.B.146.1.4
pfam Rep_556_c_47 Rep_556_c_47_13 11791 12996 + UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
TC Rep_556_c_47 Rep_556_c_47_14 12997 14256 + 2.A.66.2.10
CAZyme Rep_556_c_47 Rep_556_c_47_15 14256 15344 + GT4
pfam Rep_556_c_47 Rep_556_c_47_16 15350 16393 + EpsG
CAZyme Rep_556_c_47 Rep_556_c_47_17 16409 17275 + GT2
CAZyme Rep_556_c_47 Rep_556_c_47_18 17280 18329 + GT4
NULL(UNKNOWN) Rep_556_c_47 Rep_556_c_47_19 18349 19737 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_556_c_47 Rep_556_c_47_20 19734 21326 + PL12_3
CAZyme Rep_556_c_47 Rep_556_c_47_21 21323 22534 + GT4
Gene ID: Rep_556_c_47_12
Type: TC
Location: 10646 - 11773 (+)
Gene ID: Rep_556_c_47_13
Type: pfam
Location: 11791 - 12996 (+)
Gene ID: Rep_556_c_47_14
Type: TC
Location: 12997 - 14256 (+)
Gene ID: Rep_556_c_47_15
Type: CAZyme
Location: 14256 - 15344 (+)
Gene ID: Rep_556_c_47_16
Type: pfam
Location: 15350 - 16393 (+)
Gene ID: Rep_556_c_47_17
Type: CAZyme
Location: 16409 - 17275 (+)
Gene ID: Rep_556_c_47_18
Type: CAZyme
Location: 17280 - 18329 (+)
Gene ID: Rep_556_c_47_19
Type:
Location: 18349 - 19737 (+)
Gene ID: Rep_556_c_47_20
Type: CAZyme
Location: 19734 - 21326 (+)
Gene ID: Rep_556_c_47_21
Type: CAZyme
Location: 21323 - 22534 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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