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Cluster: Rep_556_CGC64

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_556_c_41 Rep_556_c_41_14 30681 34478 - GH130_3 | GH2
pfam Rep_556_c_41 Rep_556_c_41_15 34540 35235 - DUF3823 | DUF3823_C
TC Rep_556_c_41 Rep_556_c_41_16 35258 37105 - 8.A.46.1.5
TC Rep_556_c_41 Rep_556_c_41_17 37118 40504 - 1.B.14.6.1
STP Rep_556_c_41 Rep_556_c_41_18 40608 41534 - FecR
TF Rep_556_c_41 Rep_556_c_41_19 41602 42174 - GerE
TC Rep_556_c_41 Rep_556_c_41_20 42380 44137 - 9.B.174.1.1
Gene ID: Rep_556_c_41_14
Type: CAZyme
Location: 30681 - 34478 (-)
Gene ID: Rep_556_c_41_15
Type: pfam
Location: 34540 - 35235 (-)
Gene ID: Rep_556_c_41_16
Type: TC
Location: 35258 - 37105 (-)
Gene ID: Rep_556_c_41_17
Type: TC
Location: 37118 - 40504 (-)
Gene ID: Rep_556_c_41_18
Type: STP
Location: 40608 - 41534 (-)
Gene ID: Rep_556_c_41_19
Type: TF
Location: 41602 - 42174 (-)
Gene ID: Rep_556_c_41_20
Type: TC
Location: 42380 - 44137 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_556_c_41_15 vegan > omnivore 1.84060 0.04301
Rep_556_c_41_15 vegetarian > omnivore 2.49863 0.00079

🧭 Explore Read Mapping of CGC

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