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Cluster: Rep_556_CGC62

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_556_c_40 Rep_556_c_40_11 9365 12019 + 3.A.3.4.1
pfam Rep_556_c_40 Rep_556_c_40_12 11986 13116 + OprB
CAZyme Rep_556_c_40 Rep_556_c_40_13 13194 14642 + GH13_5
pfam Rep_556_c_40 Rep_556_c_40_14 14813 15301 - Thioredoxin | Thioredoxin_2
NULL(UNKNOWN) Rep_556_c_40 Rep_556_c_40_15 15569 15703 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_556_c_40 Rep_556_c_40_16 15703 16734 + GH130_14
CAZyme Rep_556_c_40 Rep_556_c_40_17 16731 18962 + GT4
pfam Rep_556_c_40 Rep_556_c_40_18 19028 19651 + Toprim | RecR_ZnF | Toprim_4 | RecR_C | RecR_HhH
CAZyme Rep_556_c_40 Rep_556_c_40_19 19662 20837 + GT2
Gene ID: Rep_556_c_40_11
Type: TC
Location: 9365 - 12019 (+)
Gene ID: Rep_556_c_40_12
Type: pfam
Location: 11986 - 13116 (+)
Gene ID: Rep_556_c_40_13
Type: CAZyme
Location: 13194 - 14642 (+)
Gene ID: Rep_556_c_40_14
Type: pfam
Location: 14813 - 15301 (-)
Gene ID: Rep_556_c_40_15
Type:
Location: 15569 - 15703 (+)
Gene ID: Rep_556_c_40_16
Type: CAZyme
Location: 15703 - 16734 (+)
Gene ID: Rep_556_c_40_17
Type: CAZyme
Location: 16731 - 18962 (+)
Gene ID: Rep_556_c_40_18
Type: pfam
Location: 19028 - 19651 (+)
Gene ID: Rep_556_c_40_19
Type: CAZyme
Location: 19662 - 20837 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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