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Cluster: Rep_556_CGC58

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_556_c_36 Rep_556_c_36_18 24499 25710 + 2.A.1.7.9
NULL(UNKNOWN) Rep_556_c_36 Rep_556_c_36_19 25901 26656 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_556_c_36 Rep_556_c_36_20 26631 27011 + GtrA_DPMS_TM
CAZyme Rep_556_c_36 Rep_556_c_36_21 27017 27952 + GT2
pfam Rep_556_c_36 Rep_556_c_36_22 28051 28557 - PMSR
TC Rep_556_c_36 Rep_556_c_36_23 28622 29812 + 2.A.40.1.4
TC Rep_556_c_36 Rep_556_c_36_24 29952 31334 + 3.A.1.11.8
TC Rep_556_c_36 Rep_556_c_36_25 31346 32146 + 3.A.1.11.8
TC Rep_556_c_36 Rep_556_c_36_26 32143 32931 + 3.A.1.11.8
TC Rep_556_c_36 Rep_556_c_36_27 32952 34280 + 3.A.1.11.8
pfam Rep_556_c_36 Rep_556_c_36_28 34292 34897 + Hydrolase | HAD_2
pfam Rep_556_c_36 Rep_556_c_36_29 35001 35993 + Mfa2 | Mfa_like_1
TC Rep_556_c_36 Rep_556_c_36_30 36108 36791 - 2.A.88.8.1
Gene ID: Rep_556_c_36_18
Type: TC
Location: 24499 - 25710 (+)
Gene ID: Rep_556_c_36_19
Type:
Location: 25901 - 26656 (+)
Gene ID: Rep_556_c_36_20
Type: pfam
Location: 26631 - 27011 (+)
Gene ID: Rep_556_c_36_21
Type: CAZyme
Location: 27017 - 27952 (+)
Gene ID: Rep_556_c_36_22
Type: pfam
Location: 28051 - 28557 (-)
Gene ID: Rep_556_c_36_23
Type: TC
Location: 28622 - 29812 (+)
Gene ID: Rep_556_c_36_24
Type: TC
Location: 29952 - 31334 (+)
Gene ID: Rep_556_c_36_25
Type: TC
Location: 31346 - 32146 (+)
Gene ID: Rep_556_c_36_26
Type: TC
Location: 32143 - 32931 (+)
Gene ID: Rep_556_c_36_27
Type: TC
Location: 32952 - 34280 (+)
Gene ID: Rep_556_c_36_28
Type: pfam
Location: 34292 - 34897 (+)
Gene ID: Rep_556_c_36_29
Type: pfam
Location: 35001 - 35993 (+)
Gene ID: Rep_556_c_36_30
Type: TC
Location: 36108 - 36791 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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