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Cluster: Rep_556_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_556_c_34 Rep_556_c_34_7 9131 10642 - 8.A.46.1.3
TC Rep_556_c_34 Rep_556_c_34_8 10654 13974 - 1.B.14.6.1
STP Rep_556_c_34 Rep_556_c_34_9 14131 15123 - FecR
TF Rep_556_c_34 Rep_556_c_34_10 15190 15747 - GerE
TC Rep_556_c_34 Rep_556_c_34_11 16322 17206 - 1.A.1.24.3
CAZyme Rep_556_c_34 Rep_556_c_34_12 17281 18972 + GH110
NULL(UNKNOWN) Rep_556_c_34 Rep_556_c_34_13 19024 19116 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_556_c_34 Rep_556_c_34_14 19545 22523 + 1.B.14.6.1
TC Rep_556_c_34 Rep_556_c_34_15 22546 24123 + 8.A.46.1.3
Gene ID: Rep_556_c_34_7
Type: TC
Location: 9131 - 10642 (-)
Gene ID: Rep_556_c_34_8
Type: TC
Location: 10654 - 13974 (-)
Gene ID: Rep_556_c_34_9
Type: STP
Location: 14131 - 15123 (-)
Gene ID: Rep_556_c_34_10
Type: TF
Location: 15190 - 15747 (-)
Gene ID: Rep_556_c_34_11
Type: TC
Location: 16322 - 17206 (-)
Gene ID: Rep_556_c_34_12
Type: CAZyme
Location: 17281 - 18972 (+)
Gene ID: Rep_556_c_34_13
Type:
Location: 19024 - 19116 (+)
Gene ID: Rep_556_c_34_14
Type: TC
Location: 19545 - 22523 (+)
Gene ID: Rep_556_c_34_15
Type: TC
Location: 22546 - 24123 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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