Cluster: Rep_556_CGC51
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_556
- CGC Family ID: CGCFAM_08521
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_556_c_32 | Rep_556_c_32_3 | 2030 | 5380 | + | 1.B.14.6.1 |
| pfam | Rep_556_c_32 | Rep_556_c_32_4 | 5397 | 7127 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_556_c_32 | Rep_556_c_32_5 | 7168 | 7620 | + | DUF5018-rel |
| CAZyme | Rep_556_c_32 | Rep_556_c_32_6 | 7724 | 10132 | + | GH95 |
| CAZyme | Rep_556_c_32 | Rep_556_c_32_7 | 10197 | 12857 | + | GH35 |
| CAZyme | Rep_556_c_32 | Rep_556_c_32_8 | 12884 | 15844 | + | GH2 |
| TC | Rep_556_c_32 | Rep_556_c_32_9 | 16323 | 19439 | + | 1.B.14.6.1 |
| TC | Rep_556_c_32 | Rep_556_c_32_10 | 19452 | 20975 | + | 8.A.46.1.3 |
| CAZyme | Rep_556_c_32 | Rep_556_c_32_11 | 21475 | 22842 | + | GH29 |
| CAZyme | Rep_556_c_32 | Rep_556_c_32_12 | 22866 | 25268 | + | GH95 |
| pfam | Rep_556_c_32 | Rep_556_c_32_13 | 25279 | 26226 | + | Sulfatase | Phosphodiest | Metalloenzyme |
| CAZyme | Rep_556_c_32 | Rep_556_c_32_14 | 26244 | 29078 | + | GH2 |
| pfam | Rep_556_c_32 | Rep_556_c_32_15 | 29179 | 31080 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_556_c_32 | Rep_556_c_32_16 | 31100 | 34627 | - | 1.B.14.6.1 |
Gene ID: Rep_556_c_32_3
Type: TC
Location: 2030 - 5380 (+)
Type: TC
Location: 2030 - 5380 (+)
Gene ID: Rep_556_c_32_4
Type: pfam
Location: 5397 - 7127 (+)
Type: pfam
Location: 5397 - 7127 (+)
Gene ID: Rep_556_c_32_5
Type: pfam
Location: 7168 - 7620 (+)
Type: pfam
Location: 7168 - 7620 (+)
Gene ID: Rep_556_c_32_6
Type: CAZyme
Location: 7724 - 10132 (+)
Type: CAZyme
Location: 7724 - 10132 (+)
Gene ID: Rep_556_c_32_7
Type: CAZyme
Location: 10197 - 12857 (+)
Type: CAZyme
Location: 10197 - 12857 (+)
Gene ID: Rep_556_c_32_8
Type: CAZyme
Location: 12884 - 15844 (+)
Type: CAZyme
Location: 12884 - 15844 (+)
Gene ID: Rep_556_c_32_9
Type: TC
Location: 16323 - 19439 (+)
Type: TC
Location: 16323 - 19439 (+)
Gene ID: Rep_556_c_32_10
Type: TC
Location: 19452 - 20975 (+)
Type: TC
Location: 19452 - 20975 (+)
Gene ID: Rep_556_c_32_11
Type: CAZyme
Location: 21475 - 22842 (+)
Type: CAZyme
Location: 21475 - 22842 (+)
Gene ID: Rep_556_c_32_12
Type: CAZyme
Location: 22866 - 25268 (+)
Type: CAZyme
Location: 22866 - 25268 (+)
Gene ID: Rep_556_c_32_13
Type: pfam
Location: 25279 - 26226 (+)
Type: pfam
Location: 25279 - 26226 (+)
Gene ID: Rep_556_c_32_14
Type: CAZyme
Location: 26244 - 29078 (+)
Type: CAZyme
Location: 26244 - 29078 (+)
Gene ID: Rep_556_c_32_15
Type: pfam
Location: 29179 - 31080 (-)
Type: pfam
Location: 29179 - 31080 (-)
Gene ID: Rep_556_c_32_16
Type: TC
Location: 31100 - 34627 (-)
Type: TC
Location: 31100 - 34627 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900540715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.