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Cluster: Rep_556_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_556_c_26 Rep_556_c_26_24 15923 19267 + 1.B.14.6.1
sulfatase Rep_556_c_26 Rep_556_c_26_25 19281 20969 + S1_27
CAZyme Rep_556_c_26 Rep_556_c_26_26 20986 22665 + GH165
pfam Rep_556_c_26 Rep_556_c_26_27 22904 23197 + HigB_toxin
TF Rep_556_c_26 Rep_556_c_26_28 23203 23568 + HTH_3
TC Rep_556_c_26 Rep_556_c_26_29 24141 27272 - 2.A.21.9.2
Gene ID: Rep_556_c_26_24
Type: TC
Location: 15923 - 19267 (+)
Gene ID: Rep_556_c_26_25
Type: sulfatase
Location: 19281 - 20969 (+)
Gene ID: Rep_556_c_26_26
Type: CAZyme
Location: 20986 - 22665 (+)
Gene ID: Rep_556_c_26_27
Type: pfam
Location: 22904 - 23197 (+)
Gene ID: Rep_556_c_26_28
Type: TF
Location: 23203 - 23568 (+)
Gene ID: Rep_556_c_26_29
Type: TC
Location: 24141 - 27272 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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