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Cluster: Rep_556_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_556_c_24 Rep_556_c_24_29 36829 40305 + 1.B.14.6.1
pfam Rep_556_c_24 Rep_556_c_24_30 40337 41809 + SusD_RagB | SusD-like_3
CAZyme Rep_556_c_24 Rep_556_c_24_31 41902 43080 + GH16_24
pfam Rep_556_c_24 Rep_556_c_24_32 43093 44655 + DUF4832 | DUF4874
CAZyme Rep_556_c_24 Rep_556_c_24_33 44660 46810 + GH89
CAZyme Rep_556_c_24 Rep_556_c_24_34 46851 48455 - GH31_19
pfam Rep_556_c_24 Rep_556_c_24_35 48580 51915 - TPR_6 | TPR_8 | TPR_16 | DUF5107
CAZyme Rep_556_c_24 Rep_556_c_24_36 51935 54082 - GH50
CAZyme Rep_556_c_24 Rep_556_c_24_37 54086 55795 - GH136
TC Rep_556_c_24 Rep_556_c_24_38 55829 57370 - 8.A.46.1.5
TC Rep_556_c_24 Rep_556_c_24_39 57385 60726 - 1.B.14.6.1
Gene ID: Rep_556_c_24_29
Type: TC
Location: 36829 - 40305 (+)
Gene ID: Rep_556_c_24_30
Type: pfam
Location: 40337 - 41809 (+)
Gene ID: Rep_556_c_24_31
Type: CAZyme
Location: 41902 - 43080 (+)
Gene ID: Rep_556_c_24_32
Type: pfam
Location: 43093 - 44655 (+)
Gene ID: Rep_556_c_24_33
Type: CAZyme
Location: 44660 - 46810 (+)
Gene ID: Rep_556_c_24_34
Type: CAZyme
Location: 46851 - 48455 (-)
Gene ID: Rep_556_c_24_35
Type: pfam
Location: 48580 - 51915 (-)
Gene ID: Rep_556_c_24_36
Type: CAZyme
Location: 51935 - 54082 (-)
Gene ID: Rep_556_c_24_37
Type: CAZyme
Location: 54086 - 55795 (-)
Gene ID: Rep_556_c_24_38
Type: TC
Location: 55829 - 57370 (-)
Gene ID: Rep_556_c_24_39
Type: TC
Location: 57385 - 60726 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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