Cluster: Rep_556_CGC40
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_556
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_556_c_21 | Rep_556_c_21_32 | 39308 | 42466 | + | 1.B.14.6.1 |
| pfam | Rep_556_c_21 | Rep_556_c_21_33 | 42495 | 44003 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_556_c_21 | Rep_556_c_21_34 | 44103 | 47234 | + | GH2 |
| CAZyme | Rep_556_c_21 | Rep_556_c_21_35 | 47252 | 49168 | + | GH63 |
| pfam | Rep_556_c_21 | Rep_556_c_21_36 | 49256 | 51142 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_556_c_21 | Rep_556_c_21_37 | 51173 | 54223 | - | 1.B.14.6.1 |
| CAZyme | Rep_556_c_21 | Rep_556_c_21_38 | 54863 | 57187 | + | GH92 |
Gene ID: Rep_556_c_21_32
Type: TC
Location: 39308 - 42466 (+)
Type: TC
Location: 39308 - 42466 (+)
Gene ID: Rep_556_c_21_33
Type: pfam
Location: 42495 - 44003 (+)
Type: pfam
Location: 42495 - 44003 (+)
Gene ID: Rep_556_c_21_34
Type: CAZyme
Location: 44103 - 47234 (+)
Type: CAZyme
Location: 44103 - 47234 (+)
Gene ID: Rep_556_c_21_35
Type: CAZyme
Location: 47252 - 49168 (+)
Type: CAZyme
Location: 47252 - 49168 (+)
Gene ID: Rep_556_c_21_36
Type: pfam
Location: 49256 - 51142 (-)
Type: pfam
Location: 49256 - 51142 (-)
Gene ID: Rep_556_c_21_37
Type: TC
Location: 51173 - 54223 (-)
Type: TC
Location: 51173 - 54223 (-)
Gene ID: Rep_556_c_21_38
Type: CAZyme
Location: 54863 - 57187 (+)
Type: CAZyme
Location: 54863 - 57187 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900540715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.