Cluster: Rep_556_CGC4
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_556
- CGC Family ID: CGCFAM_02931
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_556_c_0 | Rep_556_c_0_71 | 96662 | 99556 | - | GH38 |
| TF | Rep_556_c_0 | Rep_556_c_0_72 | 99768 | 100706 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_73 | 100717 | 102966 | - | GH182 |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_74 | 102978 | 104900 | - | GH97 |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_75 | 104930 | 107071 | - | GH141 |
| sulfatase | Rep_556_c_0 | Rep_556_c_0_76 | 107142 | 108629 | - | S1_15 |
| pfam | Rep_556_c_0 | Rep_556_c_0_77 | 108753 | 110555 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_556_c_0 | Rep_556_c_0_78 | 110568 | 114128 | - | 1.B.14.6.1 |
| STP | Rep_556_c_0 | Rep_556_c_0_79 | 114293 | 115252 | - | FecR |
| TF | Rep_556_c_0 | Rep_556_c_0_80 | 115359 | 115922 | - | GerE |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_81 | 116135 | 118792 | - | GH38 |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_82 | 118804 | 120966 | - | GH3 |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_83 | 120995 | 122989 | - | GH38 |
| CAZyme | Rep_556_c_0 | Rep_556_c_0_84 | 123060 | 124937 | - | GH120 |
| pfam | Rep_556_c_0 | Rep_556_c_0_85 | 125267 | 125959 | - | DUF3823 |
| pfam | Rep_556_c_0 | Rep_556_c_0_86 | 125980 | 127755 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_556_c_0 | Rep_556_c_0_87 | 127773 | 131165 | - | 1.B.14.6.1 |
Gene ID: Rep_556_c_0_71
Type: CAZyme
Location: 96662 - 99556 (-)
Type: CAZyme
Location: 96662 - 99556 (-)
Gene ID: Rep_556_c_0_72
Type: TF
Location: 99768 - 100706 (+)
Type: TF
Location: 99768 - 100706 (+)
Gene ID: Rep_556_c_0_73
Type: CAZyme
Location: 100717 - 102966 (-)
Type: CAZyme
Location: 100717 - 102966 (-)
Gene ID: Rep_556_c_0_74
Type: CAZyme
Location: 102978 - 104900 (-)
Type: CAZyme
Location: 102978 - 104900 (-)
Gene ID: Rep_556_c_0_75
Type: CAZyme
Location: 104930 - 107071 (-)
Type: CAZyme
Location: 104930 - 107071 (-)
Gene ID: Rep_556_c_0_76
Type: sulfatase
Location: 107142 - 108629 (-)
Type: sulfatase
Location: 107142 - 108629 (-)
Gene ID: Rep_556_c_0_77
Type: pfam
Location: 108753 - 110555 (-)
Type: pfam
Location: 108753 - 110555 (-)
Gene ID: Rep_556_c_0_78
Type: TC
Location: 110568 - 114128 (-)
Type: TC
Location: 110568 - 114128 (-)
Gene ID: Rep_556_c_0_79
Type: STP
Location: 114293 - 115252 (-)
Type: STP
Location: 114293 - 115252 (-)
Gene ID: Rep_556_c_0_80
Type: TF
Location: 115359 - 115922 (-)
Type: TF
Location: 115359 - 115922 (-)
Gene ID: Rep_556_c_0_81
Type: CAZyme
Location: 116135 - 118792 (-)
Type: CAZyme
Location: 116135 - 118792 (-)
Gene ID: Rep_556_c_0_82
Type: CAZyme
Location: 118804 - 120966 (-)
Type: CAZyme
Location: 118804 - 120966 (-)
Gene ID: Rep_556_c_0_83
Type: CAZyme
Location: 120995 - 122989 (-)
Type: CAZyme
Location: 120995 - 122989 (-)
Gene ID: Rep_556_c_0_84
Type: CAZyme
Location: 123060 - 124937 (-)
Type: CAZyme
Location: 123060 - 124937 (-)
Gene ID: Rep_556_c_0_85
Type: pfam
Location: 125267 - 125959 (-)
Type: pfam
Location: 125267 - 125959 (-)
Gene ID: Rep_556_c_0_86
Type: pfam
Location: 125980 - 127755 (-)
Type: pfam
Location: 125980 - 127755 (-)
Gene ID: Rep_556_c_0_87
Type: TC
Location: 127773 - 131165 (-)
Type: TC
Location: 127773 - 131165 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900540715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.