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Cluster: Rep_556_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_556_c_18 Rep_556_c_18_44 37799 39634 - 2.A.16.2.2
TC Rep_556_c_18 Rep_556_c_18_45 40053 41285 + 1.I.1.1.3
STP Rep_556_c_18 Rep_556_c_18_46 41356 41949 + Sigma70_r2 | Sigma70_r4_2
STP Rep_556_c_18 Rep_556_c_18_47 42029 43057 + FecR
TC Rep_556_c_18 Rep_556_c_18_48 43161 46421 + 1.B.14.6.1
TC Rep_556_c_18 Rep_556_c_18_49 46437 48128 + 8.A.46.1.5
sulfatase Rep_556_c_18 Rep_556_c_18_50 48222 49742 + S1_15
CAZyme Rep_556_c_18 Rep_556_c_18_51 49841 51244 + GH109
Gene ID: Rep_556_c_18_44
Type: TC
Location: 37799 - 39634 (-)
Gene ID: Rep_556_c_18_45
Type: TC
Location: 40053 - 41285 (+)
Gene ID: Rep_556_c_18_46
Type: STP
Location: 41356 - 41949 (+)
Gene ID: Rep_556_c_18_47
Type: STP
Location: 42029 - 43057 (+)
Gene ID: Rep_556_c_18_48
Type: TC
Location: 43161 - 46421 (+)
Gene ID: Rep_556_c_18_49
Type: TC
Location: 46437 - 48128 (+)
Gene ID: Rep_556_c_18_50
Type: sulfatase
Location: 48222 - 49742 (+)
Gene ID: Rep_556_c_18_51
Type: CAZyme
Location: 49841 - 51244 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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