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Cluster: Rep_556_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_556_c_10 Rep_556_c_10_1 143 1900 - GH123
pfam Rep_556_c_10 Rep_556_c_10_2 1948 3018 - Radical_SAM | SPASM
NULL(UNKNOWN) Rep_556_c_10 Rep_556_c_10_3 3170 3646 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_556_c_10 Rep_556_c_10_4 3767 5596 + 3.A.1.106.1
CAZyme Rep_556_c_10 Rep_556_c_10_5 5631 8063 + GH95
pfam Rep_556_c_10 Rep_556_c_10_6 8060 9154 - Porin_O_P | Porin_O_P
pfam Rep_556_c_10 Rep_556_c_10_7 9533 10207 - PhoU | PhoU
TC Rep_556_c_10 Rep_556_c_10_8 10249 11001 - 3.A.1.7.1
TC Rep_556_c_10 Rep_556_c_10_9 11045 11932 - 3.A.1.7.2
TC Rep_556_c_10 Rep_556_c_10_10 11940 13127 - 3.A.1.7.5
CAZyme Rep_556_c_10 Rep_556_c_10_11 13352 14554 + GH88
CAZyme Rep_556_c_10 Rep_556_c_10_12 14560 15780 + GH154
Gene ID: Rep_556_c_10_1
Type: CAZyme
Location: 143 - 1900 (-)
Gene ID: Rep_556_c_10_2
Type: pfam
Location: 1948 - 3018 (-)
Gene ID: Rep_556_c_10_3
Type:
Location: 3170 - 3646 (-)
Gene ID: Rep_556_c_10_4
Type: TC
Location: 3767 - 5596 (+)
Gene ID: Rep_556_c_10_5
Type: CAZyme
Location: 5631 - 8063 (+)
Gene ID: Rep_556_c_10_6
Type: pfam
Location: 8060 - 9154 (-)
Gene ID: Rep_556_c_10_7
Type: pfam
Location: 9533 - 10207 (-)
Gene ID: Rep_556_c_10_8
Type: TC
Location: 10249 - 11001 (-)
Gene ID: Rep_556_c_10_9
Type: TC
Location: 11045 - 11932 (-)
Gene ID: Rep_556_c_10_10
Type: TC
Location: 11940 - 13127 (-)
Gene ID: Rep_556_c_10_11
Type: CAZyme
Location: 13352 - 14554 (+)
Gene ID: Rep_556_c_10_12
Type: CAZyme
Location: 14560 - 15780 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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