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Cluster: Rep_556_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_556_c_5 Rep_556_c_5_50 49069 50709 + 2.A.67.4.2
TC Rep_556_c_5 Rep_556_c_5_51 50660 51046 + 2.A.67.4.2
pfam Rep_556_c_5 Rep_556_c_5_52 51055 52368 + SpoIID
TC Rep_556_c_5 Rep_556_c_5_53 52698 54158 + 2.A.21.3.10
pfam Rep_556_c_5 Rep_556_c_5_54 54164 54766 + MMR_HSR1 | FeoB_N
TF Rep_556_c_5 Rep_556_c_5_55 54924 59057 - HTH_AraC | HTH_AraC
TC Rep_556_c_5 Rep_556_c_5_56 59195 62398 + 1.B.14.6.1
TC Rep_556_c_5 Rep_556_c_5_57 62413 64137 + 8.A.46.1.2
NULL(UNKNOWN) Rep_556_c_5 Rep_556_c_5_58 64168 65028 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_556_c_5 Rep_556_c_5_59 65057 66217 + GH26
CAZyme Rep_556_c_5 Rep_556_c_5_60 66241 67776 + GH28
pfam Rep_556_c_5 Rep_556_c_5_61 68219 68653 - HIT
TC Rep_556_c_5 Rep_556_c_5_62 68755 71055 - 1.B.14.1.4
Gene ID: Rep_556_c_5_50
Type: TC
Location: 49069 - 50709 (+)
Gene ID: Rep_556_c_5_51
Type: TC
Location: 50660 - 51046 (+)
Gene ID: Rep_556_c_5_52
Type: pfam
Location: 51055 - 52368 (+)
Gene ID: Rep_556_c_5_53
Type: TC
Location: 52698 - 54158 (+)
Gene ID: Rep_556_c_5_54
Type: pfam
Location: 54164 - 54766 (+)
Gene ID: Rep_556_c_5_55
Type: TF
Location: 54924 - 59057 (-)
Gene ID: Rep_556_c_5_56
Type: TC
Location: 59195 - 62398 (+)
Gene ID: Rep_556_c_5_57
Type: TC
Location: 62413 - 64137 (+)
Gene ID: Rep_556_c_5_58
Type:
Location: 64168 - 65028 (+)
Gene ID: Rep_556_c_5_59
Type: CAZyme
Location: 65057 - 66217 (+)
Gene ID: Rep_556_c_5_60
Type: CAZyme
Location: 66241 - 67776 (+)
Gene ID: Rep_556_c_5_61
Type: pfam
Location: 68219 - 68653 (-)
Gene ID: Rep_556_c_5_62
Type: TC
Location: 68755 - 71055 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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