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Cluster: Rep_556_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_556_c_3 Rep_556_c_3_36 47227 51252 - CBM32 | GH2
pfam Rep_556_c_3 Rep_556_c_3_37 51348 53561 + Patatin | Omp85_2
CAZyme Rep_556_c_3 Rep_556_c_3_38 53637 55022 + CE20
pfam Rep_556_c_3 Rep_556_c_3_39 55063 55734 + DUF2461
CAZyme Rep_556_c_3 Rep_556_c_3_40 55802 56977 - GH130_1
pfam Rep_556_c_3 Rep_556_c_3_41 57011 58810 - Arylsulfotrans | Arylsulfotran_N
TC Rep_556_c_3 Rep_556_c_3_42 58912 60540 - 8.A.46.1.3
TC Rep_556_c_3 Rep_556_c_3_43 60561 63584 - 1.B.14.6.1
CAZyme Rep_556_c_3 Rep_556_c_3_44 63823 65337 - GH30_6
Gene ID: Rep_556_c_3_36
Type: CAZyme
Location: 47227 - 51252 (-)
Gene ID: Rep_556_c_3_37
Type: pfam
Location: 51348 - 53561 (+)
Gene ID: Rep_556_c_3_38
Type: CAZyme
Location: 53637 - 55022 (+)
Gene ID: Rep_556_c_3_39
Type: pfam
Location: 55063 - 55734 (+)
Gene ID: Rep_556_c_3_40
Type: CAZyme
Location: 55802 - 56977 (-)
Gene ID: Rep_556_c_3_41
Type: pfam
Location: 57011 - 58810 (-)
Gene ID: Rep_556_c_3_42
Type: TC
Location: 58912 - 60540 (-)
Gene ID: Rep_556_c_3_43
Type: TC
Location: 60561 - 63584 (-)
Gene ID: Rep_556_c_3_44
Type: CAZyme
Location: 63823 - 65337 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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