Cluster: Rep_556_CGC13
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_556
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_556_c_2 | Rep_556_c_2_46 | 57313 | 58098 | - | GH16_3 |
| CAZyme | Rep_556_c_2 | Rep_556_c_2_47 | 58229 | 60895 | - | GH2 |
| CAZyme | Rep_556_c_2 | Rep_556_c_2_48 | 61159 | 63210 | - | GH20 |
| sulfatase | Rep_556_c_2 | Rep_556_c_2_49 | 63207 | 64610 | - | S1_20 |
| CAZyme | Rep_556_c_2 | Rep_556_c_2_50 | 64620 | 67079 | - | GH2 |
| sulfatase | Rep_556_c_2 | Rep_556_c_2_51 | 67091 | 68608 | - | S1_20 |
| pfam | Rep_556_c_2 | Rep_556_c_2_52 | 68720 | 70264 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_556_c_2 | Rep_556_c_2_53 | 70280 | 73564 | - | 1.B.14.6.1 |
| STP | Rep_556_c_2 | Rep_556_c_2_54 | 73797 | 74741 | - | FecR |
| STP | Rep_556_c_2 | Rep_556_c_2_55 | 75070 | 75834 | + | FecR |
| TC | Rep_556_c_2 | Rep_556_c_2_56 | 76054 | 79440 | + | 1.B.14.6.1 |
| pfam | Rep_556_c_2 | Rep_556_c_2_57 | 79478 | 81100 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_556_c_2 | Rep_556_c_2_58 | 81180 | 82544 | + | GH29 |
| STP | Rep_556_c_2 | Rep_556_c_2_59 | 82684 | 83268 | + | Sigma70_r2 | Sigma70_r4_2 |
| STP | Rep_556_c_2 | Rep_556_c_2_60 | 83359 | 84564 | + | FecR |
| TC | Rep_556_c_2 | Rep_556_c_2_61 | 84678 | 87977 | + | 1.B.14.6.1 |
Gene ID: Rep_556_c_2_46
Type: CAZyme
Location: 57313 - 58098 (-)
Type: CAZyme
Location: 57313 - 58098 (-)
Gene ID: Rep_556_c_2_47
Type: CAZyme
Location: 58229 - 60895 (-)
Type: CAZyme
Location: 58229 - 60895 (-)
Gene ID: Rep_556_c_2_48
Type: CAZyme
Location: 61159 - 63210 (-)
Type: CAZyme
Location: 61159 - 63210 (-)
Gene ID: Rep_556_c_2_49
Type: sulfatase
Location: 63207 - 64610 (-)
Type: sulfatase
Location: 63207 - 64610 (-)
Gene ID: Rep_556_c_2_50
Type: CAZyme
Location: 64620 - 67079 (-)
Type: CAZyme
Location: 64620 - 67079 (-)
Gene ID: Rep_556_c_2_51
Type: sulfatase
Location: 67091 - 68608 (-)
Type: sulfatase
Location: 67091 - 68608 (-)
Gene ID: Rep_556_c_2_52
Type: pfam
Location: 68720 - 70264 (-)
Type: pfam
Location: 68720 - 70264 (-)
Gene ID: Rep_556_c_2_53
Type: TC
Location: 70280 - 73564 (-)
Type: TC
Location: 70280 - 73564 (-)
Gene ID: Rep_556_c_2_54
Type: STP
Location: 73797 - 74741 (-)
Type: STP
Location: 73797 - 74741 (-)
Gene ID: Rep_556_c_2_55
Type: STP
Location: 75070 - 75834 (+)
Type: STP
Location: 75070 - 75834 (+)
Gene ID: Rep_556_c_2_56
Type: TC
Location: 76054 - 79440 (+)
Type: TC
Location: 76054 - 79440 (+)
Gene ID: Rep_556_c_2_57
Type: pfam
Location: 79478 - 81100 (+)
Type: pfam
Location: 79478 - 81100 (+)
Gene ID: Rep_556_c_2_58
Type: CAZyme
Location: 81180 - 82544 (+)
Type: CAZyme
Location: 81180 - 82544 (+)
Gene ID: Rep_556_c_2_59
Type: STP
Location: 82684 - 83268 (+)
Type: STP
Location: 82684 - 83268 (+)
Gene ID: Rep_556_c_2_60
Type: STP
Location: 83359 - 84564 (+)
Type: STP
Location: 83359 - 84564 (+)
Gene ID: Rep_556_c_2_61
Type: TC
Location: 84678 - 87977 (+)
Type: TC
Location: 84678 - 87977 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900540715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.