Cluster: Rep_556_CGC12
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_556
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_556_c_1 | Rep_556_c_1_107 | 158305 | 161406 | + | 2.A.6.3.6 |
| TC | Rep_556_c_1 | Rep_556_c_1_108 | 161426 | 166228 | + | 2.A.6.3.6 |
| NULL(UNKNOWN) | Rep_556_c_1 | Rep_556_c_1_109 | 166230 | 166943 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| sulfatase | Rep_556_c_1 | Rep_556_c_1_110 | 167032 | 168573 | - | S1_16 |
| CAZyme | Rep_556_c_1 | Rep_556_c_1_111 | 168592 | 170670 | - | GH36 |
| CAZyme | Rep_556_c_1 | Rep_556_c_1_112 | 170679 | 172064 | - | GH29 |
| sulfatase | Rep_556_c_1 | Rep_556_c_1_113 | 172076 | 173536 | - | S1_27 |
| pfam | Rep_556_c_1 | Rep_556_c_1_114 | 173701 | 175611 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_556_c_1 | Rep_556_c_1_115 | 175626 | 178862 | - | 1.B.14.6.1 |
Gene ID: Rep_556_c_1_107
Type: TC
Location: 158305 - 161406 (+)
Type: TC
Location: 158305 - 161406 (+)
Gene ID: Rep_556_c_1_108
Type: TC
Location: 161426 - 166228 (+)
Type: TC
Location: 161426 - 166228 (+)
Gene ID: Rep_556_c_1_109
Type:
Location: 166230 - 166943 (+)
Type:
Location: 166230 - 166943 (+)
Gene ID: Rep_556_c_1_110
Type: sulfatase
Location: 167032 - 168573 (-)
Type: sulfatase
Location: 167032 - 168573 (-)
Gene ID: Rep_556_c_1_111
Type: CAZyme
Location: 168592 - 170670 (-)
Type: CAZyme
Location: 168592 - 170670 (-)
Gene ID: Rep_556_c_1_112
Type: CAZyme
Location: 170679 - 172064 (-)
Type: CAZyme
Location: 170679 - 172064 (-)
Gene ID: Rep_556_c_1_113
Type: sulfatase
Location: 172076 - 173536 (-)
Type: sulfatase
Location: 172076 - 173536 (-)
Gene ID: Rep_556_c_1_114
Type: pfam
Location: 173701 - 175611 (-)
Type: pfam
Location: 173701 - 175611 (-)
Gene ID: Rep_556_c_1_115
Type: TC
Location: 175626 - 178862 (-)
Type: TC
Location: 175626 - 178862 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900540715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_556_c_1_110 | vegetarian > omnivore | 2.17587 | 0.00079 |
| Rep_556_c_1_110 | vegetarian > vegan | 2.42980 | 0.04443 |
| Rep_556_c_1_112 | vegetarian > omnivore | 1.16576 | 0.00079 |
| Rep_556_c_1_112 | vegetarian > vegan | 1.69246 | 0.04502 |