Cluster: Rep_556_CGC110
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_556
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_556_c_121 | Rep_556_c_121_2 | 271 | 2610 | - | GH35 |
| peptidase | Rep_556_c_121 | Rep_556_c_121_3 | 2767 | 4809 | + | M13.017 |
| TC | Rep_556_c_121 | Rep_556_c_121_4 | 4890 | 6185 | - | 2.A.40.7.6 |
| pfam | Rep_556_c_121 | Rep_556_c_121_5 | 6196 | 6900 | - | DUF5020 |
| TC | Rep_556_c_121 | Rep_556_c_121_6 | 6989 | 7936 | - | 2.A.19.5.2 |
Gene ID: Rep_556_c_121_2
Type: CAZyme
Location: 271 - 2610 (-)
Type: CAZyme
Location: 271 - 2610 (-)
Gene ID: Rep_556_c_121_3
Type: peptidase
Location: 2767 - 4809 (+)
Type: peptidase
Location: 2767 - 4809 (+)
Gene ID: Rep_556_c_121_4
Type: TC
Location: 4890 - 6185 (-)
Type: TC
Location: 4890 - 6185 (-)
Gene ID: Rep_556_c_121_5
Type: pfam
Location: 6196 - 6900 (-)
Type: pfam
Location: 6196 - 6900 (-)
Gene ID: Rep_556_c_121_6
Type: TC
Location: 6989 - 7936 (-)
Type: TC
Location: 6989 - 7936 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900540715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_556_c_121_4 | vegetarian > omnivore | 1.57865 | 0.00079 |