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Cluster: Rep_556_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_556_c_1 Rep_556_c_1_61 87962 91246 + 1.B.14.6.1
pfam Rep_556_c_1 Rep_556_c_1_62 91260 92873 + SusD_RagB | SusD-like_3
CAZyme Rep_556_c_1 Rep_556_c_1_63 92947 94500 + GH142
CAZyme Rep_556_c_1 Rep_556_c_1_64 94518 96371 + GH127
CAZyme Rep_556_c_1 Rep_556_c_1_65 96386 98431 + GH146
CAZyme Rep_556_c_1 Rep_556_c_1_66 98592 102206 + GH106
TC Rep_556_c_1 Rep_556_c_1_67 102284 103837 - 2.A.3.7.1
Gene ID: Rep_556_c_1_61
Type: TC
Location: 87962 - 91246 (+)
Gene ID: Rep_556_c_1_62
Type: pfam
Location: 91260 - 92873 (+)
Gene ID: Rep_556_c_1_63
Type: CAZyme
Location: 92947 - 94500 (+)
Gene ID: Rep_556_c_1_64
Type: CAZyme
Location: 94518 - 96371 (+)
Gene ID: Rep_556_c_1_65
Type: CAZyme
Location: 96386 - 98431 (+)
Gene ID: Rep_556_c_1_66
Type: CAZyme
Location: 98592 - 102206 (+)
Gene ID: Rep_556_c_1_67
Type: TC
Location: 102284 - 103837 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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