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Cluster: Rep_556_CGC107

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_556_c_111 Rep_556_c_111_3 2391 3476 - 3.A.1.132.3
pfam Rep_556_c_111 Rep_556_c_111_4 3526 4284 - Methyltransf_4 | Methyltransf_25 | Methyltransf_31
TF Rep_556_c_111 Rep_556_c_111_5 4271 4990 - LytTR
TC Rep_556_c_111 Rep_556_c_111_6 4987 6051 - 8.A.59.2.1
pfam Rep_556_c_111 Rep_556_c_111_7 6041 7123 - His_kinase
TC Rep_556_c_111 Rep_556_c_111_8 7187 9556 - 1.B.14.6.5
NULL(UNKNOWN) Rep_556_c_111 Rep_556_c_111_9 9587 9787 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_556_c_111 Rep_556_c_111_10 10043 10204 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_556_c_111 Rep_556_c_111_11 10429 11466 + 9.B.33.1.1
TF Rep_556_c_111 Rep_556_c_111_12 11459 12238 + LytTR
CAZyme Rep_556_c_111 Rep_556_c_111_13 12433 15075 + CBM67 | GH78
Gene ID: Rep_556_c_111_3
Type: TC
Location: 2391 - 3476 (-)
Gene ID: Rep_556_c_111_4
Type: pfam
Location: 3526 - 4284 (-)
Gene ID: Rep_556_c_111_5
Type: TF
Location: 4271 - 4990 (-)
Gene ID: Rep_556_c_111_6
Type: TC
Location: 4987 - 6051 (-)
Gene ID: Rep_556_c_111_7
Type: pfam
Location: 6041 - 7123 (-)
Gene ID: Rep_556_c_111_8
Type: TC
Location: 7187 - 9556 (-)
Gene ID: Rep_556_c_111_9
Type:
Location: 9587 - 9787 (-)
Gene ID: Rep_556_c_111_10
Type:
Location: 10043 - 10204 (+)
Gene ID: Rep_556_c_111_11
Type: TC
Location: 10429 - 11466 (+)
Gene ID: Rep_556_c_111_12
Type: TF
Location: 11459 - 12238 (+)
Gene ID: Rep_556_c_111_13
Type: CAZyme
Location: 12433 - 15075 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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