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Cluster: Rep_556_CGC103

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_556_c_102 Rep_556_c_102_4 2185 3426 - GH2
CAZyme Rep_556_c_102 Rep_556_c_102_5 3470 4303 - GH2
TF Rep_556_c_102 Rep_556_c_102_6 4745 5341 + HTH_DeoR
TF Rep_556_c_102 Rep_556_c_102_7 5338 9420 + HTH_AraC
CAZyme Rep_556_c_102 Rep_556_c_102_8 9521 10645 + GH105
TC Rep_556_c_102 Rep_556_c_102_9 10814 13849 + 1.B.14.6.1
TC Rep_556_c_102 Rep_556_c_102_10 13871 15478 + 8.A.46.1.6
NULL(UNKNOWN) Rep_556_c_102 Rep_556_c_102_11 15566 17839 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_556_c_102 Rep_556_c_102_12 17872 19809 + GH3
Gene ID: Rep_556_c_102_4
Type: CAZyme
Location: 2185 - 3426 (-)
Gene ID: Rep_556_c_102_5
Type: CAZyme
Location: 3470 - 4303 (-)
Gene ID: Rep_556_c_102_6
Type: TF
Location: 4745 - 5341 (+)
Gene ID: Rep_556_c_102_7
Type: TF
Location: 5338 - 9420 (+)
Gene ID: Rep_556_c_102_8
Type: CAZyme
Location: 9521 - 10645 (+)
Gene ID: Rep_556_c_102_9
Type: TC
Location: 10814 - 13849 (+)
Gene ID: Rep_556_c_102_10
Type: TC
Location: 13871 - 15478 (+)
Gene ID: Rep_556_c_102_11
Type:
Location: 15566 - 17839 (+)
Gene ID: Rep_556_c_102_12
Type: CAZyme
Location: 17872 - 19809 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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