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Cluster: Rep_553_CGC78

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_553_c_72 Rep_553_c_72_8 6764 7645 + GT2
pfam Rep_553_c_72 Rep_553_c_72_9 7650 8246 + Acetyltransf_1
pfam Rep_553_c_72 Rep_553_c_72_10 8239 9384 + ATP-grasp | Dala_Dala_lig_C
CAZyme Rep_553_c_72 Rep_553_c_72_11 9381 10259 + CE4
CAZyme Rep_553_c_72 Rep_553_c_72_12 10256 11338 + GT4
CAZyme Rep_553_c_72 Rep_553_c_72_13 11339 12475 + GT4
TC Rep_553_c_72 Rep_553_c_72_14 12479 13087 + 9.B.18.1.3
Gene ID: Rep_553_c_72_8
Type: CAZyme
Location: 6764 - 7645 (+)
Gene ID: Rep_553_c_72_9
Type: pfam
Location: 7650 - 8246 (+)
Gene ID: Rep_553_c_72_10
Type: pfam
Location: 8239 - 9384 (+)
Gene ID: Rep_553_c_72_11
Type: CAZyme
Location: 9381 - 10259 (+)
Gene ID: Rep_553_c_72_12
Type: CAZyme
Location: 10256 - 11338 (+)
Gene ID: Rep_553_c_72_13
Type: CAZyme
Location: 11339 - 12475 (+)
Gene ID: Rep_553_c_72_14
Type: TC
Location: 12479 - 13087 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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