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Cluster: Rep_553_CGC70

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_553_c_53 Rep_553_c_53_11 15531 17201 + 2.A.81.1.2
TF Rep_553_c_53 Rep_553_c_53_12 17969 19069 - GntR
CAZyme Rep_553_c_53 Rep_553_c_53_13 19375 20853 + GH32
pfam Rep_553_c_53 Rep_553_c_53_14 20866 22290 + FGGY_N
NULL(UNKNOWN) Rep_553_c_53 Rep_553_c_53_15 22327 24405 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_553_c_53 Rep_553_c_53_16 24739 27933 + 1.B.14.6.1
pfam Rep_553_c_53 Rep_553_c_53_17 27959 29692 + SusD_RagB | SusD-like_3
CAZyme Rep_553_c_53 Rep_553_c_53_18 29813 31507 + GH32
Gene ID: Rep_553_c_53_11
Type: TC
Location: 15531 - 17201 (+)
Gene ID: Rep_553_c_53_12
Type: TF
Location: 17969 - 19069 (-)
Gene ID: Rep_553_c_53_13
Type: CAZyme
Location: 19375 - 20853 (+)
Gene ID: Rep_553_c_53_14
Type: pfam
Location: 20866 - 22290 (+)
Gene ID: Rep_553_c_53_15
Type:
Location: 22327 - 24405 (+)
Gene ID: Rep_553_c_53_16
Type: TC
Location: 24739 - 27933 (+)
Gene ID: Rep_553_c_53_17
Type: pfam
Location: 27959 - 29692 (+)
Gene ID: Rep_553_c_53_18
Type: CAZyme
Location: 29813 - 31507 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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