Cluster: Rep_553_CGC59
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_553
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_553_c_39 | Rep_553_c_39_10 | 14731 | 15615 | + | 2.A.64.1.3 |
| sulfatase | Rep_553_c_39 | Rep_553_c_39_11 | 15772 | 17202 | + | S1_14 |
| CAZyme | Rep_553_c_39 | Rep_553_c_39_12 | 17440 | 21051 | + | GH38 |
| TF | Rep_553_c_39 | Rep_553_c_39_13 | 21322 | 21822 | + | GerE |
| STP | Rep_553_c_39 | Rep_553_c_39_14 | 21879 | 22976 | + | FecR |
| TC | Rep_553_c_39 | Rep_553_c_39_15 | 23018 | 26548 | + | 1.B.14.6.1 |
| pfam | Rep_553_c_39 | Rep_553_c_39_16 | 26568 | 28463 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_553_c_39 | Rep_553_c_39_17 | 28573 | 30765 | + | GH92 |
| peptidase | Rep_553_c_39 | Rep_553_c_39_18 | 30847 | 31839 | + | T02.UPW |
| sulfatase | Rep_553_c_39 | Rep_553_c_39_19 | 32316 | 33137 | - | S1_4 |
| CAZyme | Rep_553_c_39 | Rep_553_c_39_20 | 33160 | 34020 | - | CE1 |
| pfam | Rep_553_c_39 | Rep_553_c_39_21 | 34052 | 34978 | - | ApbA | ApbA_C |
| TC | Rep_553_c_39 | Rep_553_c_39_22 | 35030 | 37717 | - | 3.A.3.2.41 |
Gene ID: Rep_553_c_39_10
Type: TC
Location: 14731 - 15615 (+)
Type: TC
Location: 14731 - 15615 (+)
Gene ID: Rep_553_c_39_11
Type: sulfatase
Location: 15772 - 17202 (+)
Type: sulfatase
Location: 15772 - 17202 (+)
Gene ID: Rep_553_c_39_12
Type: CAZyme
Location: 17440 - 21051 (+)
Type: CAZyme
Location: 17440 - 21051 (+)
Gene ID: Rep_553_c_39_13
Type: TF
Location: 21322 - 21822 (+)
Type: TF
Location: 21322 - 21822 (+)
Gene ID: Rep_553_c_39_14
Type: STP
Location: 21879 - 22976 (+)
Type: STP
Location: 21879 - 22976 (+)
Gene ID: Rep_553_c_39_15
Type: TC
Location: 23018 - 26548 (+)
Type: TC
Location: 23018 - 26548 (+)
Gene ID: Rep_553_c_39_16
Type: pfam
Location: 26568 - 28463 (+)
Type: pfam
Location: 26568 - 28463 (+)
Gene ID: Rep_553_c_39_17
Type: CAZyme
Location: 28573 - 30765 (+)
Type: CAZyme
Location: 28573 - 30765 (+)
Gene ID: Rep_553_c_39_18
Type: peptidase
Location: 30847 - 31839 (+)
Type: peptidase
Location: 30847 - 31839 (+)
Gene ID: Rep_553_c_39_19
Type: sulfatase
Location: 32316 - 33137 (-)
Type: sulfatase
Location: 32316 - 33137 (-)
Gene ID: Rep_553_c_39_20
Type: CAZyme
Location: 33160 - 34020 (-)
Type: CAZyme
Location: 33160 - 34020 (-)
Gene ID: Rep_553_c_39_21
Type: pfam
Location: 34052 - 34978 (-)
Type: pfam
Location: 34052 - 34978 (-)
Gene ID: Rep_553_c_39_22
Type: TC
Location: 35030 - 37717 (-)
Type: TC
Location: 35030 - 37717 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900541965
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.