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Cluster: Rep_553_CGC56

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_553_c_37 Rep_553_c_37_25 29048 29803 - 3.D.10.1.5
TC Rep_553_c_37 Rep_553_c_37_26 29831 31774 - 3.D.10.1.5
NULL(UNKNOWN) Rep_553_c_37 Rep_553_c_37_27 31827 32534 - NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_553_c_37 Rep_553_c_37_28 32809 34443 + GerE
TC Rep_553_c_37 Rep_553_c_37_29 34625 37783 + 1.B.14.6.1
pfam Rep_553_c_37 Rep_553_c_37_30 37811 39355 + SusD_RagB | SusD-like_3
CAZyme Rep_553_c_37 Rep_553_c_37_31 39475 42606 + GH2
CAZyme Rep_553_c_37 Rep_553_c_37_32 42608 44527 + GH63
Gene ID: Rep_553_c_37_25
Type: TC
Location: 29048 - 29803 (-)
Gene ID: Rep_553_c_37_26
Type: TC
Location: 29831 - 31774 (-)
Gene ID: Rep_553_c_37_27
Type:
Location: 31827 - 32534 (-)
Gene ID: Rep_553_c_37_28
Type: TF
Location: 32809 - 34443 (+)
Gene ID: Rep_553_c_37_29
Type: TC
Location: 34625 - 37783 (+)
Gene ID: Rep_553_c_37_30
Type: pfam
Location: 37811 - 39355 (+)
Gene ID: Rep_553_c_37_31
Type: CAZyme
Location: 39475 - 42606 (+)
Gene ID: Rep_553_c_37_32
Type: CAZyme
Location: 42608 - 44527 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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