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Cluster: Rep_553_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_553_c_35 Rep_553_c_35_23 25499 26824 - 3.A.5.1.1
TC Rep_553_c_35 Rep_553_c_35_24 26898 28271 - 2.A.66.1.28
pfam Rep_553_c_35 Rep_553_c_35_25 28323 28673 - Asp_decarbox
pfam Rep_553_c_35 Rep_553_c_35_26 28734 29573 - Pantoate_ligase
CAZyme Rep_553_c_35 Rep_553_c_35_27 29622 30491 + GT5
pfam Rep_553_c_35 Rep_553_c_35_28 30499 31866 + DUF4270
CAZyme Rep_553_c_35 Rep_553_c_35_29 32017 33306 - GH57
CAZyme Rep_553_c_35 Rep_553_c_35_30 33334 34596 - GT4
CAZyme Rep_553_c_35 Rep_553_c_35_31 34608 36542 - GH133
Gene ID: Rep_553_c_35_23
Type: TC
Location: 25499 - 26824 (-)
Gene ID: Rep_553_c_35_24
Type: TC
Location: 26898 - 28271 (-)
Gene ID: Rep_553_c_35_25
Type: pfam
Location: 28323 - 28673 (-)
Gene ID: Rep_553_c_35_26
Type: pfam
Location: 28734 - 29573 (-)
Gene ID: Rep_553_c_35_27
Type: CAZyme
Location: 29622 - 30491 (+)
Gene ID: Rep_553_c_35_28
Type: pfam
Location: 30499 - 31866 (+)
Gene ID: Rep_553_c_35_29
Type: CAZyme
Location: 32017 - 33306 (-)
Gene ID: Rep_553_c_35_30
Type: CAZyme
Location: 33334 - 34596 (-)
Gene ID: Rep_553_c_35_31
Type: CAZyme
Location: 34608 - 36542 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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