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Cluster: Rep_553_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_553_c_34 Rep_553_c_34_15 15941 17266 - 2.A.35.1.5
TC Rep_553_c_34 Rep_553_c_34_16 17292 19883 - 1.B.14.6.14
TC Rep_553_c_34 Rep_553_c_34_17 20211 22115 - 4.C.1.1.14
pfam Rep_553_c_34 Rep_553_c_34_18 22112 25477 - DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter
CAZyme Rep_553_c_34 Rep_553_c_34_19 25705 26463 + GT2
pfam Rep_553_c_34 Rep_553_c_34_20 26463 27569 + CCP_MauG
pfam Rep_553_c_34 Rep_553_c_34_21 27636 29375 + TPP_enzyme_M | TPP_enzyme_C | TPP_enzyme_N
CAZyme Rep_553_c_34 Rep_553_c_34_22 29460 30269 + CE1
Gene ID: Rep_553_c_34_15
Type: TC
Location: 15941 - 17266 (-)
Gene ID: Rep_553_c_34_16
Type: TC
Location: 17292 - 19883 (-)
Gene ID: Rep_553_c_34_17
Type: TC
Location: 20211 - 22115 (-)
Gene ID: Rep_553_c_34_18
Type: pfam
Location: 22112 - 25477 (-)
Gene ID: Rep_553_c_34_19
Type: CAZyme
Location: 25705 - 26463 (+)
Gene ID: Rep_553_c_34_20
Type: pfam
Location: 26463 - 27569 (+)
Gene ID: Rep_553_c_34_21
Type: pfam
Location: 27636 - 29375 (+)
Gene ID: Rep_553_c_34_22
Type: CAZyme
Location: 29460 - 30269 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_553_c_34_18 vegan > omnivore 1.35086 0.03783

🧭 Explore Read Mapping of CGC

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