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Cluster: Rep_553_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_553_c_30 Rep_553_c_30_28 31626 33728 - GH36
CAZyme Rep_553_c_30 Rep_553_c_30_29 33725 35119 - GH29
sulfatase Rep_553_c_30 Rep_553_c_30_30 35131 36585 - S1_27
pfam Rep_553_c_30 Rep_553_c_30_31 36700 38613 - SusD_RagB | SusD-like_3
TC Rep_553_c_30 Rep_553_c_30_32 38627 41863 - 1.B.14.6.1
TF Rep_553_c_30 Rep_553_c_30_33 42157 46179 + HTH_AraC
STP Rep_553_c_30 Rep_553_c_30_34 46231 47052 - TPR_1
TC Rep_553_c_30 Rep_553_c_30_35 47220 48062 + 1.A.23.2.1
Gene ID: Rep_553_c_30_28
Type: CAZyme
Location: 31626 - 33728 (-)
Gene ID: Rep_553_c_30_29
Type: CAZyme
Location: 33725 - 35119 (-)
Gene ID: Rep_553_c_30_30
Type: sulfatase
Location: 35131 - 36585 (-)
Gene ID: Rep_553_c_30_31
Type: pfam
Location: 36700 - 38613 (-)
Gene ID: Rep_553_c_30_32
Type: TC
Location: 38627 - 41863 (-)
Gene ID: Rep_553_c_30_33
Type: TF
Location: 42157 - 46179 (+)
Gene ID: Rep_553_c_30_34
Type: STP
Location: 46231 - 47052 (-)
Gene ID: Rep_553_c_30_35
Type: TC
Location: 47220 - 48062 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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