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Cluster: Rep_553_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_553_c_24 Rep_553_c_24_29 35568 37469 - 2.A.16.2.2
pfam Rep_553_c_24 Rep_553_c_24_30 37479 39203 - DHH | DHHA1 | RecJ_OB
pfam Rep_553_c_24 Rep_553_c_24_31 39459 40058 + Sua5_yciO_yrdC
TC Rep_553_c_24 Rep_553_c_24_32 40152 41936 + 2.A.49.6.1
pfam Rep_553_c_24 Rep_553_c_24_33 41942 42931 + Formyl_trans_N | Formyl_trans_C
TC Rep_553_c_24 Rep_553_c_24_34 44136 45539 + 9.B.18.1.1
NULL(UNKNOWN) Rep_553_c_24 Rep_553_c_24_35 45567 45995 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_553_c_24 Rep_553_c_24_36 45949 46818 + Poly_export | SLBB | SLBB_2
TC Rep_553_c_24 Rep_553_c_24_37 46843 49254 + 8.A.3.3.4
pfam Rep_553_c_24 Rep_553_c_24_38 49297 50832 + HMGL-like
pfam Rep_553_c_24 Rep_553_c_24_39 50839 51555 + CTP_transf_3
CAZyme Rep_553_c_24 Rep_553_c_24_40 51630 52652 + GT100
pfam Rep_553_c_24 Rep_553_c_24_41 52642 54057 + Polysacc_synt
CAZyme Rep_553_c_24 Rep_553_c_24_42 54054 55268 + GT4
pfam Rep_553_c_24 Rep_553_c_24_43 55470 56822 + Wzy_C
CAZyme Rep_553_c_24 Rep_553_c_24_44 56828 57811 + GT2
CAZyme Rep_553_c_24 Rep_553_c_24_45 57825 59027 + GT4
CAZyme Rep_553_c_24 Rep_553_c_24_46 59157 60347 + GT4
CAZyme Rep_553_c_24 Rep_553_c_24_47 60344 61426 + GT4
CAZyme Rep_553_c_24 Rep_553_c_24_48 61541 62671 + GT4
peptidase Rep_553_c_24 Rep_553_c_24_49 62920 64953 - M13.UPW
TC Rep_553_c_24 Rep_553_c_24_50 65122 66066 + 2.A.98.1.4
Gene ID: Rep_553_c_24_29
Type: TC
Location: 35568 - 37469 (-)
Gene ID: Rep_553_c_24_30
Type: pfam
Location: 37479 - 39203 (-)
Gene ID: Rep_553_c_24_31
Type: pfam
Location: 39459 - 40058 (+)
Gene ID: Rep_553_c_24_32
Type: TC
Location: 40152 - 41936 (+)
Gene ID: Rep_553_c_24_33
Type: pfam
Location: 41942 - 42931 (+)
Gene ID: Rep_553_c_24_34
Type: TC
Location: 44136 - 45539 (+)
Gene ID: Rep_553_c_24_35
Type:
Location: 45567 - 45995 (+)
Gene ID: Rep_553_c_24_36
Type: pfam
Location: 45949 - 46818 (+)
Gene ID: Rep_553_c_24_37
Type: TC
Location: 46843 - 49254 (+)
Gene ID: Rep_553_c_24_38
Type: pfam
Location: 49297 - 50832 (+)
Gene ID: Rep_553_c_24_39
Type: pfam
Location: 50839 - 51555 (+)
Gene ID: Rep_553_c_24_40
Type: CAZyme
Location: 51630 - 52652 (+)
Gene ID: Rep_553_c_24_41
Type: pfam
Location: 52642 - 54057 (+)
Gene ID: Rep_553_c_24_42
Type: CAZyme
Location: 54054 - 55268 (+)
Gene ID: Rep_553_c_24_43
Type: pfam
Location: 55470 - 56822 (+)
Gene ID: Rep_553_c_24_44
Type: CAZyme
Location: 56828 - 57811 (+)
Gene ID: Rep_553_c_24_45
Type: CAZyme
Location: 57825 - 59027 (+)
Gene ID: Rep_553_c_24_46
Type: CAZyme
Location: 59157 - 60347 (+)
Gene ID: Rep_553_c_24_47
Type: CAZyme
Location: 60344 - 61426 (+)
Gene ID: Rep_553_c_24_48
Type: CAZyme
Location: 61541 - 62671 (+)
Gene ID: Rep_553_c_24_49
Type: peptidase
Location: 62920 - 64953 (-)
Gene ID: Rep_553_c_24_50
Type: TC
Location: 65122 - 66066 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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