Cluster: Rep_553_CGC44
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_553
- CGC Family ID: CGCFAM_01022
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_553_c_23 | Rep_553_c_23_24 | 28398 | 30683 | - | GH92 |
| pfam | Rep_553_c_23 | Rep_553_c_23_25 | 31113 | 31622 | - | Flavodoxin_1 | Flavodoxin_5 |
| pfam | Rep_553_c_23 | Rep_553_c_23_26 | 31869 | 32903 | + | DoxD | DoxA | DoxX |
| CAZyme | Rep_553_c_23 | Rep_553_c_23_27 | 33003 | 34181 | - | GH172 |
| TC | Rep_553_c_23 | Rep_553_c_23_28 | 34376 | 35656 | - | 3.A.1.110.12 |
| TC | Rep_553_c_23 | Rep_553_c_23_29 | 35658 | 38702 | - | 2.A.6.2.37 |
| TC | Rep_553_c_23 | Rep_553_c_23_30 | 38714 | 39763 | - | 8.A.1.6.2 |
| pfam | Rep_553_c_23 | Rep_553_c_23_31 | 39910 | 40908 | - | Endonuclease_NS |
| CAZyme | Rep_553_c_23 | Rep_553_c_23_32 | 41014 | 43218 | - | CBM67 | GH78 |
| CAZyme | Rep_553_c_23 | Rep_553_c_23_33 | 43274 | 45028 | - | GH78 |
| pfam | Rep_553_c_23 | Rep_553_c_23_34 | 45045 | 45869 | - | Aldolase_II |
| TC | Rep_553_c_23 | Rep_553_c_23_35 | 45940 | 46965 | - | 2.A.7.6.1 |
Gene ID: Rep_553_c_23_24
Type: CAZyme
Location: 28398 - 30683 (-)
Type: CAZyme
Location: 28398 - 30683 (-)
Gene ID: Rep_553_c_23_25
Type: pfam
Location: 31113 - 31622 (-)
Type: pfam
Location: 31113 - 31622 (-)
Gene ID: Rep_553_c_23_26
Type: pfam
Location: 31869 - 32903 (+)
Type: pfam
Location: 31869 - 32903 (+)
Gene ID: Rep_553_c_23_27
Type: CAZyme
Location: 33003 - 34181 (-)
Type: CAZyme
Location: 33003 - 34181 (-)
Gene ID: Rep_553_c_23_28
Type: TC
Location: 34376 - 35656 (-)
Type: TC
Location: 34376 - 35656 (-)
Gene ID: Rep_553_c_23_29
Type: TC
Location: 35658 - 38702 (-)
Type: TC
Location: 35658 - 38702 (-)
Gene ID: Rep_553_c_23_30
Type: TC
Location: 38714 - 39763 (-)
Type: TC
Location: 38714 - 39763 (-)
Gene ID: Rep_553_c_23_31
Type: pfam
Location: 39910 - 40908 (-)
Type: pfam
Location: 39910 - 40908 (-)
Gene ID: Rep_553_c_23_32
Type: CAZyme
Location: 41014 - 43218 (-)
Type: CAZyme
Location: 41014 - 43218 (-)
Gene ID: Rep_553_c_23_33
Type: CAZyme
Location: 43274 - 45028 (-)
Type: CAZyme
Location: 43274 - 45028 (-)
Gene ID: Rep_553_c_23_34
Type: pfam
Location: 45045 - 45869 (-)
Type: pfam
Location: 45045 - 45869 (-)
Gene ID: Rep_553_c_23_35
Type: TC
Location: 45940 - 46965 (-)
Type: TC
Location: 45940 - 46965 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900541965
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.