Cluster: Rep_553_CGC42
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_553
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_553_c_23 | Rep_553_c_23_1 | 308 | 562 | + | 1.E.43.1.10 |
| pfam | Rep_553_c_23 | Rep_553_c_23_2 | 598 | 894 | + | YtxH |
| pfam | Rep_553_c_23 | Rep_553_c_23_3 | 1389 | 2162 | + | Ubie_methyltran | Methyltransf_11 | Methyltransf_12 | Methyltransf_25 | Methyltransf_31 |
| CAZyme | Rep_553_c_23 | Rep_553_c_23_4 | 2760 | 5459 | + | GH38 |
| CAZyme | Rep_553_c_23 | Rep_553_c_23_5 | 5473 | 7839 | + | GH92 |
Gene ID: Rep_553_c_23_1
Type: TC
Location: 308 - 562 (+)
Type: TC
Location: 308 - 562 (+)
Gene ID: Rep_553_c_23_2
Type: pfam
Location: 598 - 894 (+)
Type: pfam
Location: 598 - 894 (+)
Gene ID: Rep_553_c_23_3
Type: pfam
Location: 1389 - 2162 (+)
Type: pfam
Location: 1389 - 2162 (+)
Gene ID: Rep_553_c_23_4
Type: CAZyme
Location: 2760 - 5459 (+)
Type: CAZyme
Location: 2760 - 5459 (+)
Gene ID: Rep_553_c_23_5
Type: CAZyme
Location: 5473 - 7839 (+)
Type: CAZyme
Location: 5473 - 7839 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900541965
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.