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Cluster: Rep_553_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_553_c_21 Rep_553_c_21_4 3260 5623 + GH92
TC Rep_553_c_21 Rep_553_c_21_5 5633 6790 + 2.A.1.7.16
CAZyme Rep_553_c_21 Rep_553_c_21_6 6792 9683 + GH38
TF Rep_553_c_21 Rep_553_c_21_7 9973 10524 + GerE
STP Rep_553_c_21 Rep_553_c_21_8 10605 11576 + FecR
TC Rep_553_c_21 Rep_553_c_21_9 11748 15089 + 1.B.14.6.1
pfam Rep_553_c_21 Rep_553_c_21_10 15105 16769 + SusD_RagB | SusD-like_3
CAZyme Rep_553_c_21 Rep_553_c_21_11 16873 19143 + GH92
Gene ID: Rep_553_c_21_4
Type: CAZyme
Location: 3260 - 5623 (+)
Gene ID: Rep_553_c_21_5
Type: TC
Location: 5633 - 6790 (+)
Gene ID: Rep_553_c_21_6
Type: CAZyme
Location: 6792 - 9683 (+)
Gene ID: Rep_553_c_21_7
Type: TF
Location: 9973 - 10524 (+)
Gene ID: Rep_553_c_21_8
Type: STP
Location: 10605 - 11576 (+)
Gene ID: Rep_553_c_21_9
Type: TC
Location: 11748 - 15089 (+)
Gene ID: Rep_553_c_21_10
Type: pfam
Location: 15105 - 16769 (+)
Gene ID: Rep_553_c_21_11
Type: CAZyme
Location: 16873 - 19143 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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