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Cluster: Rep_553_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_553_c_17 Rep_553_c_17_41 43122 46646 + 1.B.14.6.1
pfam Rep_553_c_17 Rep_553_c_17_42 46670 48163 + SusD_RagB | SusD-like_3
CAZyme Rep_553_c_17 Rep_553_c_17_43 48270 50498 + GH89
CAZyme Rep_553_c_17 Rep_553_c_17_44 50542 52119 + GH31_19
STP Rep_553_c_17 Rep_553_c_17_45 52248 52814 - Sigma70_r2 | Sigma70_r4_2
STP Rep_553_c_17 Rep_553_c_17_46 52976 53929 + FecR
TC Rep_553_c_17 Rep_553_c_17_47 54182 57469 + 1.B.14.6.1
pfam Rep_553_c_17 Rep_553_c_17_48 57485 58993 + SusD_RagB | SusD-like_3
CAZyme Rep_553_c_17 Rep_553_c_17_49 59068 60885 + GH123
CAZyme Rep_553_c_17 Rep_553_c_17_50 61011 63062 + GH20
CAZyme Rep_553_c_17 Rep_553_c_17_51 63087 65759 + GH2
Gene ID: Rep_553_c_17_41
Type: TC
Location: 43122 - 46646 (+)
Gene ID: Rep_553_c_17_42
Type: pfam
Location: 46670 - 48163 (+)
Gene ID: Rep_553_c_17_43
Type: CAZyme
Location: 48270 - 50498 (+)
Gene ID: Rep_553_c_17_44
Type: CAZyme
Location: 50542 - 52119 (+)
Gene ID: Rep_553_c_17_45
Type: STP
Location: 52248 - 52814 (-)
Gene ID: Rep_553_c_17_46
Type: STP
Location: 52976 - 53929 (+)
Gene ID: Rep_553_c_17_47
Type: TC
Location: 54182 - 57469 (+)
Gene ID: Rep_553_c_17_48
Type: pfam
Location: 57485 - 58993 (+)
Gene ID: Rep_553_c_17_49
Type: CAZyme
Location: 59068 - 60885 (+)
Gene ID: Rep_553_c_17_50
Type: CAZyme
Location: 61011 - 63062 (+)
Gene ID: Rep_553_c_17_51
Type: CAZyme
Location: 63087 - 65759 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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