Cluster: Rep_553_CGC36
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_553
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_553_c_16 | Rep_553_c_16_26 | 33825 | 36977 | + | 1.B.14.6.1 |
| pfam | Rep_553_c_16 | Rep_553_c_16_27 | 36989 | 38905 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_553_c_16 | Rep_553_c_16_28 | 39304 | 40470 | + | GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3 |
| CAZyme | Rep_553_c_16 | Rep_553_c_16_29 | 40494 | 43592 | + | GH2 |
| TC | Rep_553_c_16 | Rep_553_c_16_30 | 43894 | 45480 | + | 9.A.25.1.1 |
| CAZyme | Rep_553_c_16 | Rep_553_c_16_31 | 45538 | 46917 | + | GH177 |
Gene ID: Rep_553_c_16_26
Type: TC
Location: 33825 - 36977 (+)
Type: TC
Location: 33825 - 36977 (+)
Gene ID: Rep_553_c_16_27
Type: pfam
Location: 36989 - 38905 (+)
Type: pfam
Location: 36989 - 38905 (+)
Gene ID: Rep_553_c_16_28
Type: pfam
Location: 39304 - 40470 (+)
Type: pfam
Location: 39304 - 40470 (+)
Gene ID: Rep_553_c_16_29
Type: CAZyme
Location: 40494 - 43592 (+)
Type: CAZyme
Location: 40494 - 43592 (+)
Gene ID: Rep_553_c_16_30
Type: TC
Location: 43894 - 45480 (+)
Type: TC
Location: 43894 - 45480 (+)
Gene ID: Rep_553_c_16_31
Type: CAZyme
Location: 45538 - 46917 (+)
Type: CAZyme
Location: 45538 - 46917 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900541965
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_553_c_16_28 | vegetarian > omnivore | 1.08727 | 0.02024 |
| Rep_553_c_16_28 | vegetarian > vegan | 1.08792 | 0.03165 |