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Cluster: Rep_553_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_553_c_15 Rep_553_c_15_60 64032 65201 + GT2
CAZyme Rep_553_c_15 Rep_553_c_15_61 65208 66395 + GT2
CAZyme Rep_553_c_15 Rep_553_c_15_62 66401 67513 + GT4
pfam Rep_553_c_15 Rep_553_c_15_63 67524 68150 + Hexapep | Hexapep_2 | Hexapep_2
CAZyme Rep_553_c_15 Rep_553_c_15_64 68143 69051 + GT2
TC Rep_553_c_15 Rep_553_c_15_65 69065 70510 + 2.A.66.2.23
CAZyme Rep_553_c_15 Rep_553_c_15_66 70507 71634 + GT4
CAZyme Rep_553_c_15 Rep_553_c_15_67 71635 72522 - GT2
pfam Rep_553_c_15 Rep_553_c_15_68 72587 73630 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | GDP_Man_Dehyd
CAZyme Rep_553_c_15 Rep_553_c_15_69 73639 74826 + GT2
STP Rep_553_c_15 Rep_553_c_15_70 74927 76039 + HATPase_c | HisKA | Response_reg
sulfatase Rep_553_c_15 Rep_553_c_15_71 76121 77278 - S1_7
TC Rep_553_c_15 Rep_553_c_15_72 77315 77899 - 3.A.8.1.1
pfam Rep_553_c_15 Rep_553_c_15_73 78108 79526 + PDZ | DUF4136 | PDZ_6
pfam Rep_553_c_15 Rep_553_c_15_74 79541 82018 + MutS_V | Smr | MSSS
TC Rep_553_c_15 Rep_553_c_15_75 82030 83112 + 1.A.35.3.2
Gene ID: Rep_553_c_15_60
Type: CAZyme
Location: 64032 - 65201 (+)
Gene ID: Rep_553_c_15_61
Type: CAZyme
Location: 65208 - 66395 (+)
Gene ID: Rep_553_c_15_62
Type: CAZyme
Location: 66401 - 67513 (+)
Gene ID: Rep_553_c_15_63
Type: pfam
Location: 67524 - 68150 (+)
Gene ID: Rep_553_c_15_64
Type: CAZyme
Location: 68143 - 69051 (+)
Gene ID: Rep_553_c_15_65
Type: TC
Location: 69065 - 70510 (+)
Gene ID: Rep_553_c_15_66
Type: CAZyme
Location: 70507 - 71634 (+)
Gene ID: Rep_553_c_15_67
Type: CAZyme
Location: 71635 - 72522 (-)
Gene ID: Rep_553_c_15_68
Type: pfam
Location: 72587 - 73630 (+)
Gene ID: Rep_553_c_15_69
Type: CAZyme
Location: 73639 - 74826 (+)
Gene ID: Rep_553_c_15_70
Type: STP
Location: 74927 - 76039 (+)
Gene ID: Rep_553_c_15_71
Type: sulfatase
Location: 76121 - 77278 (-)
Gene ID: Rep_553_c_15_72
Type: TC
Location: 77315 - 77899 (-)
Gene ID: Rep_553_c_15_73
Type: pfam
Location: 78108 - 79526 (+)
Gene ID: Rep_553_c_15_74
Type: pfam
Location: 79541 - 82018 (+)
Gene ID: Rep_553_c_15_75
Type: TC
Location: 82030 - 83112 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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