dbCAN Logo

Cluster: Rep_553_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_553_c_14 Rep_553_c_14_1 518 2347 - 2.A.16.2.2
TC Rep_553_c_14 Rep_553_c_14_2 2476 3759 + 1.I.1.1.3
STP Rep_553_c_14 Rep_553_c_14_3 3953 4498 + Sigma70_r2 | Sigma70_r4_2
STP Rep_553_c_14 Rep_553_c_14_4 4578 5600 + FecR
TC Rep_553_c_14 Rep_553_c_14_5 5637 8918 + 1.B.14.6.1
TC Rep_553_c_14 Rep_553_c_14_6 8935 10626 + 8.A.46.1.5
CAZyme Rep_553_c_14 Rep_553_c_14_7 10799 12205 + GH109
pfam Rep_553_c_14 Rep_553_c_14_8 12773 13540 + AA_kinase
TC Rep_553_c_14 Rep_553_c_14_9 13550 15016 + 3.A.1.30.1
Gene ID: Rep_553_c_14_1
Type: TC
Location: 518 - 2347 (-)
Gene ID: Rep_553_c_14_2
Type: TC
Location: 2476 - 3759 (+)
Gene ID: Rep_553_c_14_3
Type: STP
Location: 3953 - 4498 (+)
Gene ID: Rep_553_c_14_4
Type: STP
Location: 4578 - 5600 (+)
Gene ID: Rep_553_c_14_5
Type: TC
Location: 5637 - 8918 (+)
Gene ID: Rep_553_c_14_6
Type: TC
Location: 8935 - 10626 (+)
Gene ID: Rep_553_c_14_7
Type: CAZyme
Location: 10799 - 12205 (+)
Gene ID: Rep_553_c_14_8
Type: pfam
Location: 12773 - 13540 (+)
Gene ID: Rep_553_c_14_9
Type: TC
Location: 13550 - 15016 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List