Cluster: Rep_553_CGC30
🧬 Cluster Details
- Gene Count: 21
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_553
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_553_c_13 | Rep_553_c_13_41 | 46933 | 49776 | - | 1.B.14.6.13 |
| TC | Rep_553_c_13 | Rep_553_c_13_42 | 50077 | 51960 | + | 3.A.1.120.6 |
| CAZyme | Rep_553_c_13 | Rep_553_c_13_43 | 52074 | 54422 | - | GH92 |
| STP | Rep_553_c_13 | Rep_553_c_13_44 | 54564 | 55139 | - | Sigma70_r2 | Sigma70_r4_2 |
| STP | Rep_553_c_13 | Rep_553_c_13_45 | 55173 | 56222 | + | FecR |
| TC | Rep_553_c_13 | Rep_553_c_13_46 | 56243 | 59581 | + | 1.B.14.6.1 |
| TC | Rep_553_c_13 | Rep_553_c_13_47 | 59609 | 60979 | + | 8.A.46.3.2 |
| CAZyme | Rep_553_c_13 | Rep_553_c_13_48 | 60993 | 64025 | + | GH92 |
| TC | Rep_553_c_13 | Rep_553_c_13_49 | 64111 | 65769 | - | 1.C.39.4.6 |
| TC | Rep_553_c_13 | Rep_553_c_13_50 | 66629 | 67801 | + | 2.A.1.46.5 |
| pfam | Rep_553_c_13 | Rep_553_c_13_51 | 67925 | 68599 | - | DUF3823 | DUF3823_C |
| pfam | Rep_553_c_13 | Rep_553_c_13_52 | 68617 | 70455 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_553_c_13 | Rep_553_c_13_53 | 70462 | 73932 | - | 1.B.14.6.1 |
| STP | Rep_553_c_13 | Rep_553_c_13_54 | 74046 | 75032 | - | FecR |
| TC | Rep_553_c_13 | Rep_553_c_13_55 | 75589 | 76488 | + | 2.A.115.1.1 |
| STP | Rep_553_c_13 | Rep_553_c_13_56 | 76625 | 77827 | + | Aminotran_1_2 |
| TC | Rep_553_c_13 | Rep_553_c_13_57 | 77824 | 79068 | + | 3.A.1.125.5 |
| CAZyme | Rep_553_c_13 | Rep_553_c_13_58 | 79070 | 80245 | - | GT2 |
| pfam | Rep_553_c_13 | Rep_553_c_13_59 | 80332 | 81489 | - | Orn_DAP_Arg_deC | Orn_Arg_deC_N |
| pfam | Rep_553_c_13 | Rep_553_c_13_60 | 81589 | 82902 | - | AA_kinase | ACT_9 |
| TC | Rep_553_c_13 | Rep_553_c_13_61 | 82968 | 83645 | - | 3.A.1.140.1 |
Gene ID: Rep_553_c_13_41
Type: TC
Location: 46933 - 49776 (-)
Type: TC
Location: 46933 - 49776 (-)
Gene ID: Rep_553_c_13_42
Type: TC
Location: 50077 - 51960 (+)
Type: TC
Location: 50077 - 51960 (+)
Gene ID: Rep_553_c_13_43
Type: CAZyme
Location: 52074 - 54422 (-)
Type: CAZyme
Location: 52074 - 54422 (-)
Gene ID: Rep_553_c_13_44
Type: STP
Location: 54564 - 55139 (-)
Type: STP
Location: 54564 - 55139 (-)
Gene ID: Rep_553_c_13_45
Type: STP
Location: 55173 - 56222 (+)
Type: STP
Location: 55173 - 56222 (+)
Gene ID: Rep_553_c_13_46
Type: TC
Location: 56243 - 59581 (+)
Type: TC
Location: 56243 - 59581 (+)
Gene ID: Rep_553_c_13_47
Type: TC
Location: 59609 - 60979 (+)
Type: TC
Location: 59609 - 60979 (+)
Gene ID: Rep_553_c_13_48
Type: CAZyme
Location: 60993 - 64025 (+)
Type: CAZyme
Location: 60993 - 64025 (+)
Gene ID: Rep_553_c_13_49
Type: TC
Location: 64111 - 65769 (-)
Type: TC
Location: 64111 - 65769 (-)
Gene ID: Rep_553_c_13_50
Type: TC
Location: 66629 - 67801 (+)
Type: TC
Location: 66629 - 67801 (+)
Gene ID: Rep_553_c_13_51
Type: pfam
Location: 67925 - 68599 (-)
Type: pfam
Location: 67925 - 68599 (-)
Gene ID: Rep_553_c_13_52
Type: pfam
Location: 68617 - 70455 (-)
Type: pfam
Location: 68617 - 70455 (-)
Gene ID: Rep_553_c_13_53
Type: TC
Location: 70462 - 73932 (-)
Type: TC
Location: 70462 - 73932 (-)
Gene ID: Rep_553_c_13_54
Type: STP
Location: 74046 - 75032 (-)
Type: STP
Location: 74046 - 75032 (-)
Gene ID: Rep_553_c_13_55
Type: TC
Location: 75589 - 76488 (+)
Type: TC
Location: 75589 - 76488 (+)
Gene ID: Rep_553_c_13_56
Type: STP
Location: 76625 - 77827 (+)
Type: STP
Location: 76625 - 77827 (+)
Gene ID: Rep_553_c_13_57
Type: TC
Location: 77824 - 79068 (+)
Type: TC
Location: 77824 - 79068 (+)
Gene ID: Rep_553_c_13_58
Type: CAZyme
Location: 79070 - 80245 (-)
Type: CAZyme
Location: 79070 - 80245 (-)
Gene ID: Rep_553_c_13_59
Type: pfam
Location: 80332 - 81489 (-)
Type: pfam
Location: 80332 - 81489 (-)
Gene ID: Rep_553_c_13_60
Type: pfam
Location: 81589 - 82902 (-)
Type: pfam
Location: 81589 - 82902 (-)
Gene ID: Rep_553_c_13_61
Type: TC
Location: 82968 - 83645 (-)
Type: TC
Location: 82968 - 83645 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900541965
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.