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Cluster: Rep_553_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_553_c_12 Rep_553_c_12_45 55887 59309 + 1.B.14.6.1
TC Rep_553_c_12 Rep_553_c_12_46 59326 60948 + 8.A.46.1.4
pfam Rep_553_c_12 Rep_553_c_12_47 60987 62111 + SusE
pfam Rep_553_c_12 Rep_553_c_12_48 62124 63269 + SusE
CAZyme Rep_553_c_12 Rep_553_c_12_49 63366 64490 + GH76
CAZyme Rep_553_c_12 Rep_553_c_12_50 64512 66671 + GH92
NULL(UNKNOWN) Rep_553_c_12 Rep_553_c_12_51 66857 69058 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_553_c_12 Rep_553_c_12_52 69301 70491 + GH76
CAZyme Rep_553_c_12 Rep_553_c_12_53 70501 71994 + GH125
TF Rep_553_c_12 Rep_553_c_12_54 72000 72845 - HTH_AraC
pfam Rep_553_c_12 Rep_553_c_12_55 73010 74302 + DUF4925
TC Rep_553_c_12 Rep_553_c_12_56 74319 77129 + 1.B.14.10.1
Gene ID: Rep_553_c_12_45
Type: TC
Location: 55887 - 59309 (+)
Gene ID: Rep_553_c_12_46
Type: TC
Location: 59326 - 60948 (+)
Gene ID: Rep_553_c_12_47
Type: pfam
Location: 60987 - 62111 (+)
Gene ID: Rep_553_c_12_48
Type: pfam
Location: 62124 - 63269 (+)
Gene ID: Rep_553_c_12_49
Type: CAZyme
Location: 63366 - 64490 (+)
Gene ID: Rep_553_c_12_50
Type: CAZyme
Location: 64512 - 66671 (+)
Gene ID: Rep_553_c_12_51
Type:
Location: 66857 - 69058 (+)
Gene ID: Rep_553_c_12_52
Type: CAZyme
Location: 69301 - 70491 (+)
Gene ID: Rep_553_c_12_53
Type: CAZyme
Location: 70501 - 71994 (+)
Gene ID: Rep_553_c_12_54
Type: TF
Location: 72000 - 72845 (-)
Gene ID: Rep_553_c_12_55
Type: pfam
Location: 73010 - 74302 (+)
Gene ID: Rep_553_c_12_56
Type: TC
Location: 74319 - 77129 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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