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Cluster: Rep_553_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_553_c_12 Rep_553_c_12_17 20338 21513 - 2.A.23.2.11
TC Rep_553_c_12 Rep_553_c_12_18 21482 22948 - 2.A.35.1.6
TF Rep_553_c_12 Rep_553_c_12_19 23118 24620 - HTH_AraC
pfam Rep_553_c_12 Rep_553_c_12_20 24772 27114 - Glyco_hydro_65C | DUF608 | Bac_rhamnosid6H
TC Rep_553_c_12 Rep_553_c_12_21 27179 28693 - 8.A.46.1.4
TC Rep_553_c_12 Rep_553_c_12_22 28705 31680 - 1.B.14.6.1
CAZyme Rep_553_c_12 Rep_553_c_12_23 31788 33806 - GH65
NULL(UNKNOWN) Rep_553_c_12 Rep_553_c_12_24 34127 34291 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_553_c_12 Rep_553_c_12_25 34365 35570 - SDF
TC Rep_553_c_12 Rep_553_c_12_26 36028 37233 + 9.B.196.1.2
Gene ID: Rep_553_c_12_17
Type: TC
Location: 20338 - 21513 (-)
Gene ID: Rep_553_c_12_18
Type: TC
Location: 21482 - 22948 (-)
Gene ID: Rep_553_c_12_19
Type: TF
Location: 23118 - 24620 (-)
Gene ID: Rep_553_c_12_20
Type: pfam
Location: 24772 - 27114 (-)
Gene ID: Rep_553_c_12_21
Type: TC
Location: 27179 - 28693 (-)
Gene ID: Rep_553_c_12_22
Type: TC
Location: 28705 - 31680 (-)
Gene ID: Rep_553_c_12_23
Type: CAZyme
Location: 31788 - 33806 (-)
Gene ID: Rep_553_c_12_24
Type:
Location: 34127 - 34291 (+)
Gene ID: Rep_553_c_12_25
Type: pfam
Location: 34365 - 35570 (-)
Gene ID: Rep_553_c_12_26
Type: TC
Location: 36028 - 37233 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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