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Cluster: Rep_553_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_553_c_11 Rep_553_c_11_48 45619 46818 + 2.A.40.1.4
TC Rep_553_c_11 Rep_553_c_11_49 47003 48409 + 3.A.1.11.8
TC Rep_553_c_11 Rep_553_c_11_50 48399 49199 + 3.A.1.11.8
TC Rep_553_c_11 Rep_553_c_11_51 49196 49984 + 3.A.1.11.8
TC Rep_553_c_11 Rep_553_c_11_52 50003 51343 + 3.A.1.11.2
pfam Rep_553_c_11 Rep_553_c_11_53 51351 51962 + Hydrolase | HAD_2
pfam Rep_553_c_11 Rep_553_c_11_54 51999 52649 - Hydrolase | Hydrolase_like | HAD_2
CAZyme Rep_553_c_11 Rep_553_c_11_55 52682 54448 - GT83
Gene ID: Rep_553_c_11_48
Type: TC
Location: 45619 - 46818 (+)
Gene ID: Rep_553_c_11_49
Type: TC
Location: 47003 - 48409 (+)
Gene ID: Rep_553_c_11_50
Type: TC
Location: 48399 - 49199 (+)
Gene ID: Rep_553_c_11_51
Type: TC
Location: 49196 - 49984 (+)
Gene ID: Rep_553_c_11_52
Type: TC
Location: 50003 - 51343 (+)
Gene ID: Rep_553_c_11_53
Type: pfam
Location: 51351 - 51962 (+)
Gene ID: Rep_553_c_11_54
Type: pfam
Location: 51999 - 52649 (-)
Gene ID: Rep_553_c_11_55
Type: CAZyme
Location: 52682 - 54448 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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