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Cluster: Rep_553_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_553_c_10 Rep_553_c_10_31 35020 36495 - GH109
pfam Rep_553_c_10 Rep_553_c_10_32 36785 37012 + DUF4492
TC Rep_553_c_10 Rep_553_c_10_33 37025 38572 + 3.D.4.3.2
pfam Rep_553_c_10 Rep_553_c_10_34 38612 39766 + Cyt_bd_oxida_II
pfam Rep_553_c_10 Rep_553_c_10_35 40118 41032 + Lactamase_B | Lactamase_B_2
CAZyme Rep_553_c_10 Rep_553_c_10_36 41136 43190 - GH29
pfam Rep_553_c_10 Rep_553_c_10_37 43334 45178 - SusD_RagB | SusD-like_3
TC Rep_553_c_10 Rep_553_c_10_38 45196 48477 - 1.B.14.6.1
Gene ID: Rep_553_c_10_31
Type: CAZyme
Location: 35020 - 36495 (-)
Gene ID: Rep_553_c_10_32
Type: pfam
Location: 36785 - 37012 (+)
Gene ID: Rep_553_c_10_33
Type: TC
Location: 37025 - 38572 (+)
Gene ID: Rep_553_c_10_34
Type: pfam
Location: 38612 - 39766 (+)
Gene ID: Rep_553_c_10_35
Type: pfam
Location: 40118 - 41032 (+)
Gene ID: Rep_553_c_10_36
Type: CAZyme
Location: 41136 - 43190 (-)
Gene ID: Rep_553_c_10_37
Type: pfam
Location: 43334 - 45178 (-)
Gene ID: Rep_553_c_10_38
Type: TC
Location: 45196 - 48477 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_553_c_10_37 vegan > omnivore 1.52347 0.03783
Rep_553_c_10_37 vegetarian > omnivore 1.44477 0.02024

🧭 Explore Read Mapping of CGC

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