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Cluster: Rep_553_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_553_c_0 Rep_553_c_0_106 109612 110805 - GT4
pfam Rep_553_c_0 Rep_553_c_0_107 110805 111671 - Epimerase | RmlD_sub_bind
pfam Rep_553_c_0 Rep_553_c_0_108 111689 112819 - Epimerase_2
TC Rep_553_c_0 Rep_553_c_0_109 112837 113886 - 9.B.18.2.1
CAZyme Rep_553_c_0 Rep_553_c_0_110 113894 114955 - GT4
CAZyme Rep_553_c_0 Rep_553_c_0_111 114961 115716 - GT32
pfam Rep_553_c_0 Rep_553_c_0_112 115730 116797 - EpsG
NULL(UNKNOWN) Rep_553_c_0 Rep_553_c_0_113 116798 117961 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_553_c_0 Rep_553_c_0_114 117965 118825 - GT2
Gene ID: Rep_553_c_0_106
Type: CAZyme
Location: 109612 - 110805 (-)
Gene ID: Rep_553_c_0_107
Type: pfam
Location: 110805 - 111671 (-)
Gene ID: Rep_553_c_0_108
Type: pfam
Location: 111689 - 112819 (-)
Gene ID: Rep_553_c_0_109
Type: TC
Location: 112837 - 113886 (-)
Gene ID: Rep_553_c_0_110
Type: CAZyme
Location: 113894 - 114955 (-)
Gene ID: Rep_553_c_0_111
Type: CAZyme
Location: 114961 - 115716 (-)
Gene ID: Rep_553_c_0_112
Type: pfam
Location: 115730 - 116797 (-)
Gene ID: Rep_553_c_0_113
Type:
Location: 116798 - 117961 (-)
Gene ID: Rep_553_c_0_114
Type: CAZyme
Location: 117965 - 118825 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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