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Cluster: Rep_553_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_553_c_8 Rep_553_c_8_62 74571 75731 - CE9
CAZyme Rep_553_c_8 Rep_553_c_8_63 75743 76972 - CE9
TC Rep_553_c_8 Rep_553_c_8_64 77011 78948 - 3.A.1.121.4
pfam Rep_553_c_8 Rep_553_c_8_65 79089 80744 - SusD_RagB | SusD-like_3
TC Rep_553_c_8 Rep_553_c_8_66 80779 83874 - 1.B.14.6.1
TC Rep_553_c_8 Rep_553_c_8_67 84949 88071 + 1.B.14.6.1
pfam Rep_553_c_8 Rep_553_c_8_68 88092 89876 + SusD_RagB | SusD-like_2 | SusD-like_3
pfam Rep_553_c_8 Rep_553_c_8_69 90050 90604 + DUF3332
CAZyme Rep_553_c_8 Rep_553_c_8_70 90735 94097 + GH2
Gene ID: Rep_553_c_8_62
Type: CAZyme
Location: 74571 - 75731 (-)
Gene ID: Rep_553_c_8_63
Type: CAZyme
Location: 75743 - 76972 (-)
Gene ID: Rep_553_c_8_64
Type: TC
Location: 77011 - 78948 (-)
Gene ID: Rep_553_c_8_65
Type: pfam
Location: 79089 - 80744 (-)
Gene ID: Rep_553_c_8_66
Type: TC
Location: 80779 - 83874 (-)
Gene ID: Rep_553_c_8_67
Type: TC
Location: 84949 - 88071 (+)
Gene ID: Rep_553_c_8_68
Type: pfam
Location: 88092 - 89876 (+)
Gene ID: Rep_553_c_8_69
Type: pfam
Location: 90050 - 90604 (+)
Gene ID: Rep_553_c_8_70
Type: CAZyme
Location: 90735 - 94097 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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