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Cluster: Rep_553_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_553_c_6 Rep_553_c_6_60 90858 91925 + 9.B.33.1.1
TF Rep_553_c_6 Rep_553_c_6_61 91946 92704 + LytTR
TC Rep_553_c_6 Rep_553_c_6_62 92892 93980 + 8.A.1.6.3
TC Rep_553_c_6 Rep_553_c_6_63 93994 97176 + 2.A.6.2.16
TC Rep_553_c_6 Rep_553_c_6_64 97198 98565 + 1.B.17.3.5
NULL(UNKNOWN) Rep_553_c_6 Rep_553_c_6_65 98856 100490 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_553_c_6 Rep_553_c_6_66 100494 102086 - DUF6377
CAZyme Rep_553_c_6 Rep_553_c_6_67 102340 104184 + GH13_46
CAZyme Rep_553_c_6 Rep_553_c_6_68 104211 106421 + GH97
TC Rep_553_c_6 Rep_553_c_6_69 106460 109468 + 1.B.14.6.1
TC Rep_553_c_6 Rep_553_c_6_70 109480 111117 + 8.A.46.1.1
Gene ID: Rep_553_c_6_60
Type: TC
Location: 90858 - 91925 (+)
Gene ID: Rep_553_c_6_61
Type: TF
Location: 91946 - 92704 (+)
Gene ID: Rep_553_c_6_62
Type: TC
Location: 92892 - 93980 (+)
Gene ID: Rep_553_c_6_63
Type: TC
Location: 93994 - 97176 (+)
Gene ID: Rep_553_c_6_64
Type: TC
Location: 97198 - 98565 (+)
Gene ID: Rep_553_c_6_65
Type:
Location: 98856 - 100490 (+)
Gene ID: Rep_553_c_6_66
Type: pfam
Location: 100494 - 102086 (-)
Gene ID: Rep_553_c_6_67
Type: CAZyme
Location: 102340 - 104184 (+)
Gene ID: Rep_553_c_6_68
Type: CAZyme
Location: 104211 - 106421 (+)
Gene ID: Rep_553_c_6_69
Type: TC
Location: 106460 - 109468 (+)
Gene ID: Rep_553_c_6_70
Type: TC
Location: 109480 - 111117 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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