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Cluster: Rep_551_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_551_c_52 Rep_551_c_52_8 6260 8194 + GH133
CAZyme Rep_551_c_52 Rep_551_c_52_9 8209 9477 + GT4
CAZyme Rep_551_c_52 Rep_551_c_52_10 9508 10809 + GH57
pfam Rep_551_c_52 Rep_551_c_52_11 10965 12356 - DUF4270
CAZyme Rep_551_c_52 Rep_551_c_52_12 12375 13196 - GT5
pfam Rep_551_c_52 Rep_551_c_52_13 13297 14142 + Pantoate_ligase
pfam Rep_551_c_52 Rep_551_c_52_14 14194 14544 + Asp_decarbox
TC Rep_551_c_52 Rep_551_c_52_15 14787 16124 + 2.A.66.1.12
TC Rep_551_c_52 Rep_551_c_52_16 16190 17527 + 3.A.5.1.1
Gene ID: Rep_551_c_52_8
Type: CAZyme
Location: 6260 - 8194 (+)
Gene ID: Rep_551_c_52_9
Type: CAZyme
Location: 8209 - 9477 (+)
Gene ID: Rep_551_c_52_10
Type: CAZyme
Location: 9508 - 10809 (+)
Gene ID: Rep_551_c_52_11
Type: pfam
Location: 10965 - 12356 (-)
Gene ID: Rep_551_c_52_12
Type: CAZyme
Location: 12375 - 13196 (-)
Gene ID: Rep_551_c_52_13
Type: pfam
Location: 13297 - 14142 (+)
Gene ID: Rep_551_c_52_14
Type: pfam
Location: 14194 - 14544 (+)
Gene ID: Rep_551_c_52_15
Type: TC
Location: 14787 - 16124 (+)
Gene ID: Rep_551_c_52_16
Type: TC
Location: 16190 - 17527 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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