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Cluster: Rep_551_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_551_c_33 Rep_551_c_33_3 533 3859 + GH2
TC Rep_551_c_33 Rep_551_c_33_4 4058 5368 + 2.A.115.2.14
TC Rep_551_c_33 Rep_551_c_33_5 5444 7396 + 3.A.1.121.4
pfam Rep_551_c_33 Rep_551_c_33_6 7413 8072 + Pro_isomerase
pfam Rep_551_c_33 Rep_551_c_33_7 8093 8857 + Pro_isomerase | Pro_isomerase
TC Rep_551_c_33 Rep_551_c_33_8 8861 10204 + 2.A.66.1.42
pfam Rep_551_c_33 Rep_551_c_33_9 10221 11264 + IMS | IMS_HHH | IMS_C | IMS_HHH_1
CAZyme Rep_551_c_33 Rep_551_c_33_10 11402 12502 + CE1
TC Rep_551_c_33 Rep_551_c_33_11 13071 14756 + 2.A.81.1.2
NULL(UNKNOWN) Rep_551_c_33 Rep_551_c_33_12 14800 15144 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_551_c_33 Rep_551_c_33_13 15246 17129 + 3.A.1.120.6
TC Rep_551_c_33 Rep_551_c_33_14 17126 18307 + 2.A.1.46.5
Gene ID: Rep_551_c_33_3
Type: CAZyme
Location: 533 - 3859 (+)
Gene ID: Rep_551_c_33_4
Type: TC
Location: 4058 - 5368 (+)
Gene ID: Rep_551_c_33_5
Type: TC
Location: 5444 - 7396 (+)
Gene ID: Rep_551_c_33_6
Type: pfam
Location: 7413 - 8072 (+)
Gene ID: Rep_551_c_33_7
Type: pfam
Location: 8093 - 8857 (+)
Gene ID: Rep_551_c_33_8
Type: TC
Location: 8861 - 10204 (+)
Gene ID: Rep_551_c_33_9
Type: pfam
Location: 10221 - 11264 (+)
Gene ID: Rep_551_c_33_10
Type: CAZyme
Location: 11402 - 12502 (+)
Gene ID: Rep_551_c_33_11
Type: TC
Location: 13071 - 14756 (+)
Gene ID: Rep_551_c_33_12
Type:
Location: 14800 - 15144 (+)
Gene ID: Rep_551_c_33_13
Type: TC
Location: 15246 - 17129 (+)
Gene ID: Rep_551_c_33_14
Type: TC
Location: 17126 - 18307 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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