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Cluster: Rep_551_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_551_c_16 Rep_551_c_16_16 17957 20365 + 3.D.1.5.1
pfam Rep_551_c_16 Rep_551_c_16_17 20387 21370 + Fer2_4 | Fer4_20
pfam Rep_551_c_16 Rep_551_c_16_18 21373 22530 + PQQ | PQQ | PQQ | PQQ_2 | PQQ_2 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | Beta-prop_ACSF4
TC Rep_551_c_16 Rep_551_c_16_19 22864 23535 + 3.A.1.134.3
pfam Rep_551_c_16 Rep_551_c_16_20 23532 26654 + FtsX
CAZyme Rep_551_c_16 Rep_551_c_16_21 26651 27928 + GT4
sulfatase Rep_551_c_16 Rep_551_c_16_22 27958 29223 + S1_23
sulfatase Rep_551_c_16 Rep_551_c_16_23 29260 30525 + S1_23
TC Rep_551_c_16 Rep_551_c_16_24 30804 32378 + 9.A.25.1.1
CAZyme Rep_551_c_16 Rep_551_c_16_25 32421 33800 + GH177
Gene ID: Rep_551_c_16_16
Type: TC
Location: 17957 - 20365 (+)
Gene ID: Rep_551_c_16_17
Type: pfam
Location: 20387 - 21370 (+)
Gene ID: Rep_551_c_16_18
Type: pfam
Location: 21373 - 22530 (+)
Gene ID: Rep_551_c_16_19
Type: TC
Location: 22864 - 23535 (+)
Gene ID: Rep_551_c_16_20
Type: pfam
Location: 23532 - 26654 (+)
Gene ID: Rep_551_c_16_21
Type: CAZyme
Location: 26651 - 27928 (+)
Gene ID: Rep_551_c_16_22
Type: sulfatase
Location: 27958 - 29223 (+)
Gene ID: Rep_551_c_16_23
Type: sulfatase
Location: 29260 - 30525 (+)
Gene ID: Rep_551_c_16_24
Type: TC
Location: 30804 - 32378 (+)
Gene ID: Rep_551_c_16_25
Type: CAZyme
Location: 32421 - 33800 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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